Array 1 1007510-1008523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019183.1 Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1007510 29 100.0 32 ............................. GCTGATAGATTCCGCAGCCCACCACCGCCACA 1007571 29 100.0 41 ............................. CCGTCGCCGCTACCGTCGCCGTCGCCGCAGCCGTTGCCGAA 1007641 29 100.0 32 ............................. CCAGATAGCGGCCTTTTCTGAATCTGGCGTAT 1007702 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1007763 29 100.0 32 ............................. GTAAAAACAGCAGAGAGTTATTTACCTCGTAT 1007824 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 1007885 29 100.0 32 ............................. TACAACCGTTGACAGACCAGAATTTACCGTAG 1007946 29 100.0 32 ............................. AATCATTTTCATAACTAATCTCCTTAGGTGTT 1008007 29 100.0 32 ............................. TCCGCAGCGTATACGGCAGGAACAAATAAAGC 1008068 29 100.0 32 ............................. CTCCCTGCCTAATTCAATAATTTTGGGGATAT 1008129 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 1008190 29 100.0 32 ............................. GTATAACTCTCGCCTCTTTAGCTAAAGACAAT 1008251 29 100.0 32 ............................. AACATTACAACATGAACCGCTGGCGGGCTGAT 1008312 29 100.0 32 ............................. CGGTTTTTATTTTTGCTGCATTCCGCCTCCCG 1008373 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 1008434 29 100.0 33 ............................. GTTCAGAACGATTATATTTTGATTTGTGTTCAG 1008496 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ========================================= ================== 17 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTAGAATGTGGTGATGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCAATATTGCGCGCGAACGTTATGCGGCAATAACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGTGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1025193-1032787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019183.1 Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1025193 29 100.0 32 ............................. CCGTGTTTACGCCGCGCTGGAACGTCTGGGAT 1025254 29 100.0 32 ............................. TATCTGGATAAGCGCGGCCTGCGCAGCAAAAC 1025315 29 100.0 32 ............................. TGATGACAGCACTAACGCCCCACGCGGAACGC 1025376 29 100.0 32 ............................. TCACCGAGCGTTACGGCGACACTGTTTGGGAT 1025437 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 1025498 29 100.0 32 ............................. ACGGTACGGGCAGTTTTATTTGCGTGTGTAAT 1025559 29 96.6 32 ............................A ACATTGGAACATAACCGAGCACGCTCATTATC 1025620 29 100.0 32 ............................. GAGTGTTTAAAATGGTTTTCTATCACGGTACG 1025681 29 100.0 32 ............................. TCACCGAGCGTTACGGCGACACTGTTTGGGAT 1025742 29 100.0 32 ............................. GGTTACCGATTGGCGTTGTCGTTAACGGCCCG 1025803 29 100.0 32 ............................. TATTAATCGACCTGACGCGACGTTACCGGGCG 1025864 29 100.0 32 ............................. GACTGGCTAATCACGGTTAACGCCGTGCCGGT 1025925 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGGGC 1025986 29 100.0 32 ............................. CTCATTCGCCCATGATAAAAAGTTTTCGGTAA 1026047 29 100.0 32 ............................. AATTACTGGTTGGCGATACGGTGGAGTTAACT 1026108 29 100.0 32 ............................. GGCGCACCAATTAGCACATATTATTTAGATAC 1026169 29 100.0 32 ............................. TTACGTCATGGGTAACTTTTTCAGGCGTGGTG 1026230 29 100.0 32 ............................. AATCACTTCATTGCCTTCTTTTTCGGCTACCT 1026291 29 100.0 32 ............................. CCCTATCTCAACCTGTTTGGCCTTTCTTGGCA 1026352 29 100.0 32 ............................. TTTCCAGACCATTGATTGCGGGACACCGCACA 1026413 29 100.0 32 ............................. GCGATATCAGGAAAATGGCCCAACTTGGTATT 1026474 29 100.0 33 ............................. CAAAAGCTTTCCGGGCGCGAAGTTGATACCAGC 1026536 29 100.0 32 ............................. CCATTAAAGCCATGCGTGCGCAGGTGGCGGAC 1026597 29 100.0 32 ............................. TCGCGTCCGCCCCAACGATAACTGGTTTCATT 1026658 29 100.0 32 ............................. CGTCTCTGGAGATGGTAGATGCTCCGACACAA 1026719 29 100.0 32 ............................. GCTCCCACGATACTGGCCCGCTGGAAAACTAC 1026780 29 100.0 32 ............................. TTCTATCCGATATGTTCCATATTCAGGATCAT 1026841 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACCACGG 1026902 29 100.0 32 ............................. CCGCCACATCGGAAACGGCAGTATTGCCACAT 1026963 29 96.6 32 ............T................ TGTGCCGCAGCAAACACCATGATCGTTGTCCC 1027024 29 100.0 32 ............................. TGTATGGCAAACGCTGGATAACCTTTGGGTGA 1027085 29 100.0 32 ............................. AATTTGCGTGGCGCACACCTGCGCCATATAAC 1027146 29 100.0 32 ............................. TTTCTTTTGTTTCGGTTTGCTGTGATTGTTCA 1027207 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 1027268 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 1027329 29 100.0 32 ............................. ACCCAACTTGTGCTGAAAATGATAGACGCTAC 1027390 29 100.0 32 ............................. AGGTTGATCCTTGGCTGATTATAAAAAATTAC 1027451 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 1027512 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 1027573 29 100.0 32 ............................. CCCAGCAGAGCAACGCCATTTTGCAGGTTACC 1027634 29 100.0 32 ............................. CCAACTGGCCGGAAACTTTCCCCAACGTGTCA 1027695 29 100.0 32 ............................. GCGCATGATCGTAGTGCGCGGGCGTAGTAAAT 1027756 29 100.0 32 ............................. TACCTACGATTTTTCCGGGGACGTCGAGGGGA 1027817 29 100.0 32 ............................. GATATTTTAAACCAGACTGACGCGTTGATCGT 1027878 29 100.0 32 ............................. GCGAGCTTGTGGGGCCGCCGCGAATTTTCAGC 1027939 29 100.0 32 ............................. TTAGAAGCTGCACCAACAGGGACTTGGTATGT 1028000 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGTG 1028061 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 1028122 29 100.0 32 ............................. GTATCGCCGCCCAGTTACGCCAGGAGGCAGCC 1028183 29 100.0 32 ............................. TATTTTTGCGGTATCAATATCCCCTCGAGCGC 1028244 29 100.0 32 ............................. CCAGCGACGCGCATTTCGCCTCCAGTTCCCGA 1028305 29 100.0 32 ............................. CTGAGGAACGGGCATCCACCAACTAGCCATTA 1028366 29 100.0 32 ............................. ATCTGTATAGAGAAAAGAAACGGCAGCTTTGC 1028427 29 100.0 32 ............................. GGCGATGGCACAAAACGGTCAAAACTCATAAC 1028488 29 100.0 32 ............................. TTATATTGAGACTCACGCATCGCCTGTTGCGC 1028549 29 100.0 32 ............................. CTGCGCAGGCTGAATCCGGCAACGCTGAAACC 1028610 29 100.0 32 ............................. CGTTGTAATGGGTGAACTTTGAAGGTGTGCCA 1028671 29 100.0 32 ............................. ACCAGCCCTATACGAGCTCTCCTGCAATTGCT 1028732 29 100.0 32 ............................. AGTCTCGTTCATTTCCTGCCCGGTATTTGCAA 1028793 29 100.0 32 ............................. CGGCTAAAATGCAGGAAAAATGGGGCAGGATT 1028854 29 100.0 32 ............................. ATCCGAGGCCCTTCAATTATTGCCGTGTCGGC 1028915 29 100.0 32 ............................. GGAGATACACCTGCCTGTTATACCCGGCAGGT 1028976 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 1029037 29 100.0 32 ............................. CAGTAATTTTTTCATCAATCATGCCTGTATAT 1029098 29 100.0 32 ............................. TAATCGCGCCATCATGCGAGCGCTTTTTTCTT 1029159 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 1029220 29 100.0 32 ............................. AAAAAAGAGGCGCTATTGGGTGAATACGGCAC 1029281 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 1029342 29 100.0 32 ............................. TTCCAATCTGCGCCATCCACAACTCGTCCGGC 1029403 29 100.0 32 ............................. TTTGGGAGGATCGCCCGGGACTCCCGCGCCCG 1029464 29 96.6 32 ............................T GATCGCCGGTGCCAGCGCCCTCAGTTCCCCGC 1029525 29 100.0 32 ............................. GGATTTAGTTCAGTCTGTTATGACGGCCAGTA 1029586 29 100.0 32 ............................. ACGCTACCGATCTGGTGGCTATGTCGTTTGCA 1029647 29 100.0 32 ............................. GCTGCGACCGCCCCGAACCGGCGCTGGCTAGG 1029708 29 100.0 32 ............................. AAATTAAAGCCGCGCGCGATCGGGCGTTTGTG 1029769 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 1029830 29 100.0 32 ............................. AAAACAACGTACGACACACCGCTATCAGCGCG 1029891 29 100.0 32 ............................. CATGCCGCAATAATGCCGGCTGTAGTCTTTAA 1029952 29 100.0 32 ............................. GCGATACCACAACGAGCGGCGGCGATTACTGG 1030013 29 100.0 32 ............................. TTGATATAGTGACACGTCACAATAAAAAATCG 1030074 29 100.0 32 ............................. GTATTTTTAGCGCCGAGTTGAGCTATTGTCGA 1030135 29 100.0 32 ............................. TGCTGGCCGCTGCTGTTGATGAGCGCGGGCAC 1030196 29 100.0 32 ............................. TAGTTGAGATCGCCGCCTCGCAGGTGGGCGTA 1030257 29 100.0 32 ............................. AATTTCGCGCCGTAATGGAAAACGGCGGGCGG 1030318 29 100.0 32 ............................. CTGAATACGACGCAGACGCGGCGGGGCTTACC 1030379 29 100.0 32 ............................. TTCCGCCATGACCGTTTCAGCCTCCAGCTTTC 1030440 29 100.0 32 ............................. TTCATATTCCAGAAAATGCCTGGGTGATGATC 1030501 29 100.0 32 ............................. GATGGGACCGCCAGTGGGCTGATAATATAGAA 1030562 29 100.0 32 ............................. CGGCGCGGGTAGTCCCGATTTAGCGGCCGTTA 1030623 29 100.0 32 ............................. ACCTTTATTTTTGCTGCCCATAACCGTGTCCT 1030684 29 100.0 32 ............................. TTCATCTGATAATGATTGTGCTGCTTTGGTGC 1030745 29 100.0 32 ............................. AGTAAATCCGACAATAACGTCAGCTAATACAC 1030806 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 1030867 29 100.0 32 ............................. ATTTACCTTTCTGTATTTAACGCGGCTTGAAT 1030928 29 100.0 32 ............................. CCTCGCGTAATGCGTCATCACCCAGCGCCATA 1030989 29 100.0 32 ............................. GCGACGCCGGCGTCCGGATTCACACAACGGTC 1031050 29 96.6 32 ............................C GGAACGGTAGTTGATACCGCGTTTTATTGGCC 1031111 29 100.0 32 ............................. CCTGCCACCAGATACAGCTTGCCCGCCCGGCA 1031172 29 100.0 32 ............................. CGCCGCTCACCGTCGCGCGGTCCTCTCCAGTA 1031233 29 96.6 32 ............................T GAGACCCGGTGGATACAAATTATCGGGAGAGG 1031294 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 1031355 29 100.0 32 ............................. CCAAAAAAATCCATCGACCCCACAAAACTGGT 1031416 29 100.0 32 ............................. AATCAGCCCCGTTATCAAAACTGACATTGATG 1031477 29 100.0 32 ............................. CACCCTCTCGGTGAATGCCTACCCAGTAGTCA 1031538 29 100.0 32 ............................. GTTAAAAAACATACTAAAAACAGGCATGGCGC 1031599 29 100.0 32 ............................. CTAACAAAGGAACAGGGAAAATTAACTAACGA 1031660 29 96.6 32 ............................T TAACGATTAGCCATTGGTCATATGTTGGTGGC 1031721 29 100.0 32 ............................. GGCTCACAGAGCAGATCGGCGGGTTCGCTTAC 1031782 29 100.0 32 ............................. ACATTATAGAACCGTCATCATTCATTTGAACC 1031843 29 100.0 32 ............................. ACAATGAATATATTCTATGGCTTCCAGCATCT 1031904 29 100.0 32 ............................. CACAATGAAGAGGGAACAACAAATGGACTCAG 1031965 29 100.0 32 ............................. GGTGCTTGTAACCAACTGAATAATAGAATTAT 1032026 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 1032087 29 100.0 32 ............................. CGGATGAAAAATTCGCACGAATGCAGAATGGC 1032148 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 1032209 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 1032270 29 100.0 32 ............................. CATTCGATGCCAGTAAAATTGAAGCACACCAC 1032331 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 1032392 29 100.0 32 ............................. ACCCAACTTGTGCTGAAAATGATAGACGCTAC 1032453 29 100.0 32 ............................. AGGTTGATCCTTGGCTGATTATAAAAAATTAC 1032514 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 1032575 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 1032636 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 1032697 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1032758 29 100.0 0 ............................. | A [1032785] ========== ====== ====== ====== ============================= ================================= ================== 125 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //