Array 1 161183-159872 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTQ01000004.1 Salmonella enterica strain BCW_3310 NODE_4_length_245219_cov_3.53499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161182 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 161121 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 161060 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 160999 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 160938 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 160877 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 160816 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 160755 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 160694 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 160633 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 160572 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 160511 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 160450 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 160389 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 160328 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 160267 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 160206 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 160145 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 160084 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 160023 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 159962 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 159901 29 100.0 0 ............................. | A [159874] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171234-169315 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTQ01000004.1 Salmonella enterica strain BCW_3310 NODE_4_length_245219_cov_3.53499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 171233 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 171172 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 171111 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 171050 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 170989 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 170928 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 170867 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 170806 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 170745 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 170684 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 170623 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 170562 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 170501 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 170440 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 170379 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 170318 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 170257 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 170196 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 170135 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 170074 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 170013 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 169952 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 169891 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 169830 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 169769 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 169708 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 169647 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 169586 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 169525 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 169464 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 169403 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 169342 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //