Array 1 1694-1238 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITD01000006.1 Cronobacter sakazakii strain CS-5 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1693 29 96.6 32 ............................C GGTCCGGCGGGCCGGAGAACAGCAGCTCACCC 1632 29 100.0 32 ............................. TGATAAAAAAATGATACTGTTTGTATGTACAG 1571 29 100.0 33 ............................. GTATATAGTTTTAGAGTGTTCCCCGCGCGAGCG 1509 29 100.0 32 ............................. TCTGCATTGAGCATCCGCAGGCCGTGCAGCTT 1448 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 1387 29 96.6 32 ........T.................... CGACACGATCCGCCGCCTGGGTTACGAAAGCT 1326 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 1266 29 93.1 0 .....................G......A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTAGCCGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAAGGTTGGTAGAATGTTGTTTCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCCTTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTGTATCTGTTCTATTTTTGCTAGTTATAATGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCAATCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29581-28698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITD01000006.1 Cronobacter sakazakii strain CS-5 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29580 29 100.0 32 ............................. CGCAACGCGCTGCACCTGACCAGACAATTTTT 29519 29 100.0 32 ............................. CCTTCGCTATCGATCACGCTCAGATGGGAATC 29458 29 100.0 32 ............................. GCTGCAATGCCGGTCAGGGTCAGCAGTTCCTG 29397 29 100.0 32 ............................. CCTCCTCATGCGAGCGGGCGCTGGTCATCAGC 29336 29 100.0 32 ............................. AAGGCGTTTACGGCTTGTTGGGCTTGTTTAAT 29275 29 100.0 32 ............................. GTGTTAACTCAAATTCATCGTCCCACGGTGGG 29214 29 100.0 32 ............................. ACCCGCCAGGCTGATGAACTCGCAGACCGGCA 29153 29 100.0 32 ............................. TCGGAATCCTATGGTCAGCCTGTGATGTACAA 29092 29 100.0 32 ............................. CAGTCGGAGAAAGGTGCGCGGTTTATTGAATT 29031 29 100.0 32 ............................. CGGAATACAAAATTTTCGTCAGCGTTCGCTGT 28970 29 100.0 32 ............................. CTCACACTGATTCCATTCAACGCAACATAGGA 28909 29 96.6 32 ...........................T. TTTGCCACCACAATAATCATTCCAGTTCTCAT 28848 29 96.6 32 .........A................... TCTTCCAGGAGATCGATCCCTTGTCTCAGAGC 28787 29 93.1 32 AT........................... TACGGCGCTTGCAGCTCTTGCGATCATTATGG 28726 29 86.2 0 .T...................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : ACGCCACCTGATTCACGGCGCTGATGTGAAATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //