Array 1 193528-192108 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTLP01000002.1 Parabacteroides sp. AF39-10AC AF39-10AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 193527 37 100.0 36 ..................................... TAGCGCGACGGGAACGCATAGGTGTGCTACCATAAC 193454 37 100.0 34 ..................................... TCAACTGATTAAACTGTCGCCTCGTCATCTGATA 193383 37 100.0 35 ..................................... AACGTCTTTAGTCTTGATAACCAAATCCATGACAT 193311 37 100.0 34 ..................................... CCAGCTGATTGAGCACCAGCAAATGCATCTGCTC 193240 37 100.0 36 ..................................... TTCTAGACTCATGATCGTACACTTCATAGTCGTCTC 193167 37 100.0 36 ..................................... GCTTCATCTCTTTAAGTTTCTTGAATTTGTATACGC 193094 37 100.0 36 ..................................... TGTTTGGTTCCTGTTCACGTGGAGAGGAGACGAAGG 193021 37 100.0 34 ..................................... TTACGAACAAAGTCAGGAAAGCCTGTTACTTCAA 192950 37 100.0 36 ..................................... TTATCCTTGATAGACAAATCCATAGCATTTTACGGT 192877 37 100.0 35 ..................................... ACCGCACCTGTTAGCGTTTTCTCACTTGCTTTCTT 192805 37 100.0 38 ..................................... TGTAATAAACGCTTTCATATCAATTTTGTTTAAATTAA 192730 37 100.0 37 ..................................... CCAACTAGGATAACCTTACGTCCTAGCGCATCTGTTA 192656 37 100.0 37 ..................................... CTTTTCCGTAACATACGAAATCTCTTTACTTAATATC 192582 37 100.0 35 ..................................... ACCTCTTTACCGCTTTTAAATAGCTGACACCACGC 192510 37 100.0 37 ..................................... TTTCCGGATTTAAATAGTTGACACCACGCTTTAACCG 192436 37 100.0 35 ..................................... TCCATAGAAAGTGGCGTATCTTTGTGAAAAAGTTT 192364 37 100.0 36 ..................................... CTTGCAGGTGTACCATCAGGTAATGTACGTATTACG 192291 37 97.3 36 .........A........................... TCAGACAATTTTAACTCTGCTTTTATTTTTATTTTC 192218 37 100.0 37 ..................................... TTATCCGTTGCCGCTGGTTCTATTGTTATTTTGATAT 192144 37 86.5 0 ............A........T..C........TA.. | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.2 36 GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Left flank : AAGGAATAACTTACGGTTTGTCAAGTGAACAACTTGCGAGTTCCTCTAGCCACTAACTTATGGCTTGGAAAGCTATTTACAGATGGCTTCAAACTATCATTTTGATCGCTTTGATGGTTCTTTATATCGTTGTTTATTATGCGGTTAGATAAAAAATGGAGGATTTGTGAATTGTTTTCTTGAATGCACGTGACTCGCCCTCCGGCAAGGGATTCCGGTTCTTTTTGACGGTCGGCAAGTAACTTAACTTCATCGACCAAGTATCTTAGTTGTGTTGGCAAAGTATCTTAAGATACTTGGTCGATGAAGTTAAGTTACTTTGCCAACTAGGGAATTTTGGTGCGGTTGCCCTAATTTAGCTCAAATCGCTCTTTAACTTATTGAAAAAATCACTACCTTCGCAGTCTCTTAAAAACAGGTTAATATTTGTGAATTAAAGAGTGGAAGTATATGAATTTCTAAGGTATAGATTTGGAATATATAGGTTTAAGAATTTTGCC # Right flank : AAATTCACCAAAATCTCGACTTTCCCAAAGAATTGACAATTTGACAATTTGTTATCCAAACCCTTTGAGAATCGAATATTTCGGGGTAAAGTACATCTCGCTTCCAAATTCGCAAGAAAAAAATAGCAATGTACTGTTTATTAACTAGATGTTGAAAAAGCAGTCTTTCATTTGAGCGAAAATAATTCACCTTAATTCCTATCACGGCAGTTGTTTGGACGTTTTTTAGGATCACGGCTGGGTTGTAACAAGGTTAGAATGCCTATTCAAGACTGCTGATAACCCTATTCTTGGCTACTTTCGATGCCCAACGACAGTACTGGCGTGTCCCGAAACGACTACCGGAACACGCTCAAACCACTACTTGTGCACATGAGCCATGCTATTTCTACCCAAAAACGAGCCTTTCGTCTCTCTATTCTCCCTTATTTTATCAATTTGCCACAAAACACTTGTCACAAAACACATCTTTTGGAGAACAAAATGACAATAAATGTTGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGGTAGTTCCATTAGAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 201471-201627 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTLP01000006.1 Parabacteroides sp. AF39-10AC AF39-10AC.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 201471 26 100.0 39 .......................... GCGTAATTATTCAGGAGGGGTAAATATGAGTTGTTTCTA 201536 26 100.0 40 .......................... TTCCGAGGTCAAGGTAACGACTAAAACGGGGTTGTTTCTA 201602 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 CCTTTCAAACTAAAGGTTAATACAAC # Left flank : AGTGACCTTGATATTAATGATACCATTTGCTCCTATTTCCATTGCTTTATTACATAAGACATTAATAGCATCATCAGAAAAAGCTTGTTTGTATTTTCCGTATTTGACTTTATGCTTATCATAGGTCTCCCCATAAATATCATCTTTCATTCCTTTGCGAACGCTCTCTCCTATAATCTCATAACCACTTTGAACTTTTGCGGATACACTACCAATAGCTTTATATTCAAAATTGACAGAATTGGCTTCTGTCATAAAAAATCCTTTGTTTGTATATTCTGAATAATCTAATACCACTGCGCTTTGTTGGTATGGAGATTTAGGAATAATACTACAGCCTGTTATGGCTGCGACGAAAATGAGAGATAATAATGTTTTCTTCATATCGTGTGAATTTAAATGTTAACAATGCTGCAAGTAAGTAAAGTTTATTTGAAATACAAAGGTTTTTCTTGATTATTTAAGTTGATAAGAGTATATATCTTAAAATGTTGTTTTTG # Right flank : CTGATTGCGAAATTCAGGTTAAAAGATTGTTGTTTCTACCTTTCAACCAAAGAGCATAAAATGTTTTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCTGCTATAATCTTTTTTGCATAGACGAAATCGTCAGAAATCTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCTATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATAGCGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCTTCTTCGAAATCTAGGCATTCTCTTTTATAATTTTCATAAGGTTGAATCTTTACGCTAGAAGATATACTATTGTTTCTTTTGACTTTACTTAATACTTTATTCAAAGAGCTGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCAAACTAAAGGTTAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //