Array 1 19991-18701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCX01000012.1 Neisseria meningitidis strain M40150 M40150_S4_cleaned_ctg_6125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19990 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19924 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 19858 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 19792 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 19726 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 19660 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 19594 36 100.0 30 .................................... TACATCGGCGGGATGTTTCAGTTCGTTTAT 19528 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19462 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 19396 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 19330 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 19264 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 19198 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 19132 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 19066 36 100.0 30 .................................... AAAAACTTTTTAGGGGGTCGGAAAAAATGA 19000 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 18934 36 100.0 30 .................................... AGTAAGATGAGAAAATTATTGGGGGGTGGC 18868 36 100.0 30 .................................... TGTACGACTCGGCTCAGGCACGCAACAAGT 18802 36 100.0 30 .................................... ATTTTAAGCTTCATGACGATACCGTTTGAT 18736 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //