Array 1 2266451-2266669 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHCU01000003.1 Staphylococcus aureus strain NCTC10399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2266451 30 100.0 36 .............................. TTGATGCGTAGCATCCAACTGTATTCCTCTATTTTA 2266517 30 100.0 36 .............................. TTGATGCGCAGCATCCAACTGTGTTCCTCTATTTTT 2266583 30 93.3 27 .............A...............T GCGCTTAGCGCAGGCGCTCCTATTTTT 2266640 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 33 CAACTTTAGTTGTTAGGGGCTCTTATGCAG # Left flank : ATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGCCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCACTCTCTCAAAGTGTTGCAGAAAATATCATAAGAGTTTATACAGTAATGACAATCATTTTATTCGTTGTTATTCATGCAATCATTTTAATGGGTATCGTTCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGATAAAGTAAAAACAGCTGACAAGGATAAAAAAGTTGTCACTGAACCAAAAAATACAAAAGTAGAAAACGATAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAATTGATAATACAACAAAAACAATGACTTCAGATAAACCAGAAGACAATCAACCAAAATAAATTTTAGAGCCCCTTA # Right flank : GAAGTTCCTATTTTTAATACAGCTATAGTTGATGTCATATGATATTTTAATATTAGTTTAAACTTACATCCACTCAACATAAAAAGGAGAGGTAAAGATGACATATGGTTCAATCATCGCTATCGTTTGTGCACTATTTGCAATCTTCTTTATACCGTATATGGAAAAGAACAATAAAAAGAAGAAATAACACAAGCGTCTGGATTTCTAGTATACAAGAGGCTGGGACATAATTCCCTAAAAACAGCAGTAAGATGTTTTTCAATCAGAAAATATCTTACTGCTCTTTTGTATATTGCTCATCAACTATTTTGAATTTATTATTTAATCAGCTAAAAAATGCTTTGCTAAATATTTTGCTGCGCCATCCTCTTCATTCGTGTATGCTGTTACATCTGAAGTTAATGCTTGGATTTCAGGGCGTGCATTTTTCATTGCGACTGTGTAATGTCCAAATTCAAACATGGCTCTATCATTATCACTATCACCAATGACTAACG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAACTTTAGTTGTTAGGGGCTCTTATGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 2804660-2804977 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHCU01000003.1 Staphylococcus aureus strain NCTC10399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================================================================== ==================================== ================== 2804660 84 100.0 30 .................................................................................... TGAGTCGGACATACTTGCTGACATTGACTC 2804774 84 100.0 36 .................................................................................... TGACGCACTTTCCGAATTAGACGTACTTAATGACGT 2804894 84 84.5 0 ......G...G....C.....T.....G..A........T..T....C......A..............A.TA........... | ========== ====== ====== ====== ==================================================================================== ==================================== ================== 3 84 94.8 34 TGATGCACTTATTGAAACTGAGTCTGAATCGCTCATTGAAGTCGAGTTAGACATGCTTGTTGATGTTGAGTCGCTCATTGAAAC # Left flank : TAAAAAGACTAAGGATATTTCACTAATTATTAAAATCTGATATAGATTTTTTAGTGAACAACGCCCCAGTCTTTTTAATTTTAGCCAGCTATAAATTCAATTTATGCTTGAGAATCATCTTGATCATTTTCATCTTTCTTTTTCTTTCTCTTCATTAAACCTAAACCAACTAATAATGTCATAACGCCACCTAGTAATCCATTTTGTTTTATTGAGTCACCTGTATCTGGCAATCTTTCTTCACTTTGCGCAGGTTCAGCATCATGTTTTGATGATACAGATGTCGCACTTAATGTTGACTGAGATTCATTTGTATTTGGTGCTATGGACTCACTTGTTGAAATAGATGTGCTCGTGAAATGAGTCTGACTCGTACTCATCGAATTTGACGGATGTATTGAGTTAGATTCTGATGTACTCATTGACATTGAGTTAGACATACTTGATGATGTTGAGTCGCTTATTGAAACTGAGTCGGACATACTTGCTGACATTGACTC # Right flank : CTGAGTCTGAATCGCTCATTGAATTAGAATCACTCAAACTCATTAACCCAGAAGTACTTAGAGAAGTGAAGTGTCTTATCGAATTAGACATACTTCCAGAATTAGATGTACTTATCGAGTCTGAGTCGCTCACTGAAGTCGAGTTGTGCGTTGAACCAGACATACTTAATGATTCATATGTACTTATCGAAGTTGAACCACTTGTTGATCCGGAAATACTTTGTGACATTGAAATACTCGCTGAATTAGATTCACTCATTGATGTTGAGTCAGATACACTCGTTGAACCAGATGTACTTAAGGAACTAGACGTACTCGATGAGTCAGATACGCTCGTTGAACCTGAACCAGACGTACTTAATGATTCTGATACGCTTGTTGAACCTGAATTAGACGTACTCAACGATTCAGATACGCTTGTTGAACCTGAATTAGACGTACTTAATGATTCTGATGTGCTTGTTGAAGTTGAACCACTTGTTGAGCCAGATGTGCTTAAT # Questionable array : YES Score: 3.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:-1, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATGCACTTATTGAAACTGAGTCTGAATCGCTCATTGAAGTCGAGTTAGACATGCTTGTTGATGTTGAGTCGCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.77%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //