Array 1 1759926-1758641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQTM010000001.1 Clostridium perfringens strain 2C45 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1759925 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 1759860 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 1759794 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 1759728 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 1759662 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 1759596 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 1759532 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 1759466 36 100.0 29 .................................... TTAAATCGTTGTTTAAGTATCTCATAGCC 1759401 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 1759335 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 1759269 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 1759203 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 1759137 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 1759072 36 100.0 30 .................................... TACTTATAATTATTTAAATAGTGCTAGAGT 1759006 36 100.0 30 .................................... GAGAATGATGTTGCTAATAATGAAAAAATA 1758940 36 100.0 30 .................................... TTAAAAGGTGCATTAACTCCAATGCTCTTG 1758874 36 100.0 30 .................................... GTAAGAATGGGATTTGTCTTGGCTCCTCAT 1758808 36 100.0 30 .................................... TTATATTAGTTACTCAAAATGATAGGCTTA 1758742 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 1758676 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGCTGAAATGCTTAAACCTATTACAGACG # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 860-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQTM010000002.1 Clostridium perfringens strain 2C45 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 859 36 86.1 30 A...ACA...A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [845,851] 791 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 725 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 659 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 593 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 527 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 461 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 395 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 329 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 264 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 198 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 132 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TCATAAAATGACAAAGGAAATCAAAAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //