Array 1 76857-76614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRPS01000026.1 Megasphaera elsdenii strain 24-50 Cont26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 76856 31 100.0 39 ............................... GTGAACGGCATCGCTCAGAACGCCAGTAAGCTTTTCAGC 76786 31 100.0 36 ............................... AGAGCGAGCTTTCTAACGAAATCCGGAGGATCCAGC 76719 31 100.0 44 ............................... TTTATCCGGCCCTGGCCCTGGAACACGATCTGGAAATCATCCCA 76644 31 87.1 0 ...T................CG....A.... | ========== ====== ====== ====== =============================== ============================================ ================== 4 31 96.8 40 TTGCCATTCGTACGCGGAGGTAAGTTGAAAT # Left flank : TTAAAAAGAGGAATCAAGGTCGCGATAATAAAAATCCATTTGGTTTTATATGCATGATTTTATTGACAACAAAGCAAAAGTGTCCTATAATAATACCTGTAATCGATGTACCGCAATGTACATCAATGGCACCTAATTGGGTTCGTTTGCTTTTCCCTAAGCCGAGAAGGGCCGGCGTCGAAATCACCGGTACCGCTCGGCAAAAGCCTGGCAAAAAATAAGTCCAGCAACTCACCGTGAACGAGTTGAAATAAAAAAACGCCCCGTCAAAGGATAGGGTACATACCATAATTGGGTTCGTTTGCTTTTCCCTAAGCTGAGAAGGGCCGATGCCGAAATCACCGGTACCGCTCGGCAAAAGCCTGGCAAAAAATAAGTCCAGCAGCTTCCTTCAAACAGTGCGAAGGTCTCCTGCGTACTTTCTTTCGAAGGGCCTTTTCATGAAGTTCGCGAAAGGAAGAGTACAGGACAAGGCAGGGCCTAGCATCTGACGTAGGCCC # Right flank : CGGAATTTGAGGATTTCCCCTCCACGGACCATCCGCTTGCACTCCGTGTATGCGATTGGGTTGAGGGTTTTAAAATCCTAATCTACTTTTATTTAAACAAATGGTGCCAAAACAAGAAGAGAGCGAGTTTTTAGGCTTGCTCTCTTTTATTTTATATTGAGGAGGTGTTGGTATGAGCCAGGAATTGGAACAATGGCTGATAGAGGAGTGGAGAGAAGGATACAAGGAAGGCTTCAAGAAGGGGTTGAAAAAAGGCGAAGACCGAGTGGCGGCCTTGTGGGAACGGCTGGAAGCCGACGGCCGCTTGCAAGATTTCTATGACGCTATCGACGATGAAACCATCCGAAAAAAATTATACGACGAATACGGTATCGAATGATCGGAAAGCCCCGTGCAGAATGCGCGGGGTTTATTGCCTTCTGGCCCAAATTCTTTGGACAAACAGGTCGCTCATTCTGAAGTTCCTCTTGCAGATGCATGAGCCGAATAGCAACCAGAAC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCCATTCGTACGCGGAGGTAAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 185054-187366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRPS01000018.1 Megasphaera elsdenii strain 24-50 Cont18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 185054 28 100.0 32 ............................ GTATGGCGTTCGTATTAGCCCGGATTCCTTAA 185114 28 100.0 32 ............................ ATTAATGTCGTTGCGCTGCCATTTGCAAGACT 185174 28 100.0 33 ............................ ATGCGGAAATATTTCCATATTCGTCGGCATAAT 185235 28 100.0 33 ............................ CAAGAAATACTCTGGCCCTATACGACCTCTATC 185296 28 100.0 32 ............................ GTTTGTTCAAGTAAAACATGATATTGAGAAAT 185356 28 100.0 32 ............................ GTCTTAAAGCGTAGGGAACATGCATCCCAAGG 185416 28 100.0 32 ............................ TTTTTACCTTCTAACCAACCATGGAAGCAATA 185476 28 100.0 32 ............................ GGCAACGTTTGGTATCCCTGATGATTTAAAAG 185536 28 100.0 32 ............................ AGGATATACACCCGGTTAGCGTCGACGTTGTA 185596 28 100.0 32 ............................ TTATATTTCCAATTTGCATACACCTGAGTACG 185656 28 100.0 32 ............................ AAAGTGTTCTATTGATATCCCGCACATACAAT 185716 28 100.0 32 ............................ GAGTGTATGTGCGACCATACCCGGCATGAGCG 185776 28 100.0 32 ............................ GTAGCTAACGAGACAGAGATGCTGGCCCTCAC 185836 28 100.0 32 ............................ CATAATTATATTGAAAATATTAACAACGCTGG 185896 28 100.0 32 ............................ GCTTGATCATCGCCACCATCTACGACCACTTC 185956 28 100.0 32 ............................ ATCGATAAGTATATCACTGCCAAAGTGTTCTA 186016 28 100.0 32 ............................ TGTCTGGCAGGTATCGGAGCCAGTATCACAGG 186076 28 100.0 34 ............................ CAGAAGATCTCCCTACTCCTGATAAAAGCATCAA 186138 28 100.0 32 ............................ CAGAAGCCGTCGGTCAAGGTGTCCGGCAATCC 186198 28 100.0 32 ............................ GATACGCATGTTATTTAATCGCAATGAATGGA 186258 28 100.0 32 ............................ TGAAAGATGGCCTTGCGAAGGAGGGTAAGTAA 186318 28 100.0 32 ............................ AGGGGAAACGTGAACACTGCATCGTTGAGAGC 186378 28 100.0 32 ............................ TTGCGTAACCGTCGCAAGGTCTACTTTGCTAT 186438 28 100.0 33 ............................ GGGTGCTTGTCGAGCCAGCGCATGAAGGCATCG 186499 28 100.0 32 ............................ TCGAAAATGTAGTCTCTGATGTCGGCCATTTC 186559 28 100.0 32 ............................ ATTCGGTGATTAAAGGAGGCAAAGAACATGAT 186619 28 100.0 32 ............................ GAAAGAAGGGAGTGAGAAAAACGGACATTAGC 186679 28 100.0 32 ............................ ACAGGGCATTACATTACCTATGTTACGATATT 186739 28 100.0 32 ............................ TCTAACCTTATTATGCTCCTTTCACAAGGAAA 186799 28 100.0 32 ............................ TTAAGAGCGGCAGTATCATCTGTTTCTCCGTC 186859 28 100.0 32 ............................ TGCTTTGATTGTGCTTCAAGTCGACTCATGCG 186919 28 100.0 32 ............................ ATCAGTAACATCTACATGGTCATTAAAATAAT 186979 28 100.0 32 ............................ AGGGTAATCGGGATCGTGATATTGCCGGACCC 187039 28 100.0 32 ............................ TTTGGTAAAGGTGATAGCCTTGTCTAGCTTAA 187099 28 100.0 32 ............................ TGGGGCTGGCCGCTGTCTCCATCCCTGTTGGA 187159 28 96.4 32 .................T.......... TGTCGTCAAAAATTCGTCAAAAAAAAGAAATG 187219 28 100.0 32 ............................ AGACCTACGATTACATTTCGAAAAAATACGGC 187279 28 100.0 32 ............................ TGAATATCTACATTCAGCTGGTTTTCTTTGTA 187339 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.8 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCTGCAGCGTTTGAATCTGGCCGATGCACTGATGCGTTTTGCCCCAGATTACGTGAAGATTACGACAATCCGTCAGGTTCCTATCAGGAAATGTAAGGGATACGTGACATACAGCCGATATCAGCCGGAAGCTACGGTTATGCAGAAAGCTAGACGCTATGCAAAGCGACACGGTATTTCAATAGAAGAAGCGCAAAAGCTTTTTCCCACGGCTGTCAGTAAAAGTCGCTATCCGTATATCCAGCTGGAGAGCATGACCAATCACCATCGTTTCAGCCTGTTCATCCAGAAGCAGGAAGCCGTAGAGCAGCCATGCAGCGGTTTCTCTGCCTATGGATTCAGCAAGAAATCGTCTGTTCCTGATTTCTGACCAAAGTTTTTACTATGTACCGGAAAGCCTTGTAAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGTATCAGGATATTCGCATAAAAGTCTACT # Right flank : ATCTTCCATTTTTTCATTTTAGTTGTGCTGGTCATGTATTTTGCAGAAAATCTACCGACTGCTATCACGACAAGAAACATGGTATAATGAAAGAAAAATGTCAGAAAGAAGTGGAATCTATGATTAAACGTTGTAATCATGACTGTGATTTTTCTTGTCAGCAGTCAGAAGATCAGAAGATGCGTGTCATTGTTGAAGAGCATGAGAAATTGTCACCGAATCTTATTTTTGAAATCATCCGCCACGATGGCGAGATGGAATTGGAACGGCCGGCCTGGCCTTTGATTTTGTCAGCCTTGGCGGCAGGCTTGATGATTTCGTTTTCGTTTTATTTCCGCTCTATCATCCATGTCTATATCGGCCAGGCTCCCTGGACGGGGGCGATTACGGGCTTCGGCTATACGACGGGGTTCTTGATTGTCATCCTCGGGCGCTTGCAGCTTTTTACGGAAAATACGATTACGACGGTCATTCCTGTCTTCCGCGTACCTTGCTGGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 198754-199056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRPS01000018.1 Megasphaera elsdenii strain 24-50 Cont18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 198754 32 100.0 36 ................................ CCATGGCATCCGCTTCATTGCATCCAAACAGCTCAG 198822 32 100.0 35 ................................ GTCCATAAATAAGCCCCCCTTAAAACTGACTTGAT 198889 32 100.0 36 ................................ AATATAGATTGTGGCCCAACTAGAACCCATTATGAC 198957 32 100.0 36 ................................ CAGACCAAACGTTGCACAAGTACCACATGTCGGCAG 199025 32 93.8 0 ..............................CG | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GTTATTCAGCTTTTGGCCGGTTTCCTTATAATAGTCAATGCGGTCACTCAGCATCTTGTTGTAGATGAATCGGACACACCCAAAGGTCTTGGCAAACATCATTTTCTGTGCCGTTGTCGGATAGATTCTGTATCGGTATGCCTTATTCACTATCATCACCTGCCTTGACTTTCTATATACTTTCACTCTTACTACTGATTATACTGCAAATCAACTTGTGAAGCTATTGTTTTTCTGATGGCATCGAGCCCTCAGAAAAACCTGCAATTCATCTCACCGCCTAAAGAGGCGGGAGACTTCTTGCAGAATCAGGTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCC # Right flank : GCTTATCCTGTTTATCATCGGAACGGCCTTTTTATCGTAGTTTCGCCAGAAGACTCCTTCCTCTTAGGTAGGGGATGAATGGCGATGGATTTCGCAGGTTCGATGCCTGCGAAATCCACCCTATGTCTTTTCCATCTTAGCCTTTTCACTTCGTCTACGGTATAATGGTAGATAACAGAGGAGGTGAATCCTAGATGTACTTGACGCAATCAAATGTCATCCGCGGCTTGTCGAAACAAGACTATACGATGCTCCGGGAAATGTGCCAATGCAGCAATAACCTGTACAATGTAGCGGTCTATACGATTCGGCAGCATTACTTCGATACCCAGCAATTCTTGCGGTACGAAAAAAATTACCCCATCTGCAAGAAAAATGAAAACTATGGCTTGTTGCAGGCCGGTGTCGCCCAGCAGATATTGAAGATGGCCGACCGCAGTTTTCGTTCTTTTTTCGGGCTTTTGCAGAAAGTCAGGTCAGGTGACTATGGTTCAAAGGAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //