Array 1 3621-2538 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOH02000003.1 Streptomyces phaeoluteigriseus strain DSM 41896 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================================== ================== 3620 29 93.1 32 ........T................C... AGCGCCGTTGGCTGCACACCGCCGCCGCGCAC 3559 29 89.7 32 ...........G.C...........C... TTGATCTGGCTGGCGCCCTTGCGGTTGAACCT 3498 29 100.0 36 ............................. GGCAGGGCCCGCAGCCACCTCACCCCCGAGGCCTGC 3433 29 93.1 31 T..........C................. CGCTCCCTCTCAACTCCGCACCGTTCAAACT 3373 29 75.9 32 .C.T....G..G.C....A.....A.... GCTTCACTGTGGACCGACGCCGACGTGTACGT 3312 29 82.8 32 ...........G..AC........A...A CGGCGCATGGCGTCTTGCGTGGCCTGCCGGCG 3251 29 82.8 32 .C......T..G.C...........G... TTCAAGGCGGTGTACGGCGGCGGCACCATCAC 3190 29 93.1 32 ..A.......T.................. GACTCCCGCACCGGGCTTGAGTTCCGCGTCGA 3129 29 100.0 32 ............................. CTTTTCGTCTCGACCATGCGGACGCTGGTCCC 3068 29 93.1 32 ............T............C... GAAGATGTTGAAGGCGCCGGCCAGAACCCCCG 3007 29 82.8 228 ...........G.CT......G....T.. GGACCCGAACGGCTCAACGGTCCGGGCCCTCCTCGCTGGCGCGGGCCCGCTCATCAACGCCCCCGGATTCACGGTGACACCCCGTCACCGCGGACCGGGCAATGTGAGGCCGGCCGACAGCATCGCTGCCACCGAGGCCTGCTTTAGGACTTTTGTAGTGGTATGCCGGAGTCGGTGAAAGTGCTGAGGAACGGGACTCGCCTGGGAGAAACTTGCAGGTGACGCAGT 2750 29 93.1 32 ...........G.C............... GCCTGGTAGGCGGTACGGAGTTTGGTTGCGGC 2689 29 93.1 32 ...........G.C............... TGGAGATCACGAAACTGGAATCCGCCGGACGC 2628 29 100.0 32 ............................. GCGAATTCCAGCGGCGGCCGCCCTCGTTCCAT C [2623] 2566 29 93.1 0 .........A...............C... | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================================== ================== 15 29 91.0 46 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCCCGGAACTGGGTCAGGCTCAGCTCTGTATGCTCCCCGCACGCGCGGGGATGGTCCCAAGGGCGGCGTCGTCCCCGGCACCGGCAGCTCCTGCTTCTCGTGCCCGCGGGGATGGTCCCCCGCGGGCACGAGCACCACCCACCCGGTCTCTGCTCCCCGTGCCCGCAGGGATGGTCCCGACCATTGGGACCCGGGCGCCATCAGCAAGGCCTGCTCCCCGCACGCGCGGGAATGGTCCCGGCTGTATCGGCTCGATGCGTGTCACAGCATGCTGCTCCCTGCGCCCGCGGATGGTCTCATCGGGCACAACGCGGGGACTTCGCCTGTTCTCGCACCCGTTCCGGTCGGCGGCGCCGGCGCGGGTGCGGCCACTGCGGAGCCGCCCAGCAGCATCGTCACCATCGACGCCTGCCAGTTAGGGCGTTTTGAGTGGTATGCCGGAGTTGGTGAAAGTGCTGAAAAGCGGGCCCCGCTCGGGAGAAACTCCCAGGTGAGGAAGT # Right flank : GCCAACCGGGTACGAGTGAACCTGCTCAGCGAGCCGTTTCCACCGGTCACCTCCACCACACCCGCTTTGGGAGCAGGCCGCCCGCTGTCGGTGGTGTCAGGACACAGGCTCGCCCTGGCGGGATCTGGGAGGTAGGGCCTGGTGGTGGCGTTGCAGGGTGTAGAGGTCCCAGCTGTCGGGGTCGCCGATGTAGACGAACAGCTTGGGGTGCTCGGAAGTTCCGAGCACCTCCCAGGTGTCCATGCGGCAGTCGTCGACGGAGATAATCACCTCCTGTGACCAGGGTCCTGCACCGGGGTCGTACTCCCAGGTCCCGGTGCCGGTGCACTCGTGCATCACGGTTTCGAAGGAGTCGTCGAGCTCGAACGTCTCGACGCGGGTCGCCGTGGCCGTACCGTCCGGCATGAGGGTGAGCGTGCCGCCCTTTCCGTCGGACCATGTCCCGGCGGCCGCTTCGACTCCCAGCTGCGGAGGTTCGTATCCGATTCCGGCGTACAGGC # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.37, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5896-3882 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOH02000003.1 Streptomyces phaeoluteigriseus strain DSM 41896 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 5895 29 79.3 32 A.CA.....T...A...A........... CAGACGATTTTCGAACTCTAGGTCGCTCAGAC 5834 28 89.7 32 ..........T..-......A........ TCCCAGTTGTCGGAGTCAGGGCCGCTGTACGA A [5819] 5773 29 96.6 141 ........................A.... GCACCCGGCGGGACGGGCCGTCATCACTCTCTGCTCCCCGCGGGATGGCGCCTTCGACCACGTGGTTGTTGCCGTGGTGAAGCGCAGATCCCCGCGTCAGCGGGAATGGCCCTTCAGCCTTCATTCGGGTGGCATAGCGAC 5603 29 75.9 157 .AA..T.......T...T....A.....T GGGTCACCGGCTGGGCGATGGCGGCCAGGTGCTGCTCCCCGTTGCAACATCATCCCCACCGGCGCCGGCTAGTTGGTGCGTTTTGAGTGGTATGCCGGAGTCGGTGAAAGTGCTGAGAAACGAGCCCCGCCTGGGAGAAACTTGCAGGTGACGCAGT 5417 29 93.1 32 ...........G.C............... CGCTCCTACTATGCCCGCTGGGTGGAGTACGG 5356 29 93.1 32 ...........G.C............... TCCTCATCCACCCGGTACGTCCAGCCCGTTGG 5295 29 93.1 32 .............CA.............. CACGACGGCTACATCGACTTCTCGAATCCGAA 5234 28 86.2 32 ....C...-..G.C............... AACGACCTTCCGGTGGTCGTCACCACCCAGTC 5174 29 86.2 32 ........T..G.CT.............. TGGGCAGTGGACGAGGAGGAGACGGACCGCTC 5113 29 86.2 180 ..........TG.C...........C... AGGCTCTGCAACTCGCGGCCTGTCGGCGACGGCACTGGGTGATGGCGGCCAGGTGCTGCTCCCCGGTCCCGCACGATTCCCACCGGCGCCCGCTAATTGGGCATTTTGAGTGGTATGCCGGAGTCGTTGAAAGTGCTGAGAAAAGGGCCTCGCTCGGGAGGAACTCGCAGGTGATGCAGT T [5088] 4903 29 86.2 32 ...........G.AT..........C... TACGCGGCCTGCCCGCACGGCTACCTCCTCGA 4842 29 89.7 33 ...........G.C..............T GCCCTGGCCGGCACCGTTCCGTCGTCCTGAAAC 4780 29 96.6 32 T............................ GAGGCGAACACCGACGGGAACGCGCGCTTCTA 4719 29 96.6 32 ..........G.................. TTCGAGGCGGTGTACGGCGGCGGCACCATCAC T [4693] 4657 28 89.7 33 ..A........C.............-... TGCGGCCCGCCTCGGCGCCGGCCGAAGCCGCAT 4596 28 86.2 32 ........-..G.C.......T....... GGCAGCCGCGGCGCATCCCACACCGCAGCCCT 4536 29 93.1 31 ...........G.C............... CCGCAAGAGAACCCCCCGCCGCCAGTCCCTC 4476 28 93.1 176 ........-...T................ GGACCTCGGTGGCGCCAGTTCCGGTCGTCGCCGGCGCGGGCTCGTGCGCTGTGGGGCCGCCCGGCAGCATCGCCACCATCGACGCCTGCCAGTTAGGGCCTTTGGGTGGTATGCCGGAGTCGGTGAAAGTGCTGAGAAAAGGGCCTCGCTTGGGAGAAACTTGCAGGTGACGCAGT 4272 29 100.0 32 ............................. CTCACACAGGCCGTGATCTTCGGCGCCGGTCT 4211 29 89.7 30 ...........T.............C..A GGCGCGGCGCAGGGACCGCGTGCCTTTGCG 4152 29 89.7 32 ...........G.C..............T GTGGCCCGGAACTGGGTCAGGCTCAGCTCTGT 4091 29 96.6 32 A............................ AAGGGCGGCGTCGTCCCCGGCACCGGCAGCTC 4030 29 82.8 30 .....T.T..TG.C............... CCGCGGGCACGAGCACCACCCACCCGGTCT 3971 29 86.2 32 ..........TG.C...A........... GACCATTGGGACCCGGGCGCCATCAGCAAGGC 3910 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 25 29 90.1 54 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCGGGCTCTTCCACCCGTACGGCACGGTCAGGGCGTCCGGGTGCACCGTCAGCCCGAACCCAGGACCGGAGGTCCGCGGGTCACCGTCGGCCTGGTATTTCGGCGATCCCATCGCTTTCAGCCGCTTCGCCAGCGTCAACGCATAGCAGTTGTCACATCCCTCGGAGACACGGTCGCACCCCGTGGTCGGGTTCCATGTCGCCTCGGTCCACTCGATCGCACTGCGGTCACTCACCGGCCGGCCCTCCATCCCCTCGAACCGAGCCCTGTCTCCGACGGCACAGCGGCGTTCCGCTGTGAATTCAACGACCCGCCACACCACCGGATACCGGCATCCAACCATCCGACGGCCACACCGTACTCACTACCCTCAACATCGAACACGTGTTCCCTTGCTTGTGTCAGTGGGCATGATGTAAACAGGCCAACCTCGTGCACTGATATGGCCGTTGCCCGCCGCGACCACAGCCTGAGGACTTCACCTTGAGACCCACCGTGGG # Right flank : GGCTGTATCGGCTCGATGCGTGTCACAGCATGCTGCTCCCTGCGCCCGCGGATGGTCTCATCGGGCACAACGCGGGGACTTCGCCTGTTCTCGCACCCGTTCCGGTCGGCGGCGCCGGCGCGGGTGCGGCCACTGCGGAGCCGCCCAGCAGCATCGTCACCATCGACGCCTGCCAGTTAGGGCGTTTTGAGTGGTATGCCGGAGTTGGTGAAAGTGCTGAAAAGCGGGCCCCGCTCGGGAGAAACTCCCAGGTGAGGAAGTCTGCTCCCTGCACGCGCGGGGATGGCCCCAGCGCCGTTGGCTGCACACCGCCGCCGCGCACCTGCTCCCCGCGCCCGCGGGGATGGCCCCTTGATCTGGCTGGCGCCCTTGCGGTTGAACCTCTGCTCCCCGCACGCGCGGGGATGGTCCCGGCAGGGCCCGCAGCCACCTCACCCCCGAGGCCTGCTTGCTCCCCGCCCGCGCGGGGATGGTCCCCGCTCCCTCTCAACTCCGCACCG # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 11827-11009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOH02000003.1 Streptomyces phaeoluteigriseus strain DSM 41896 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 11826 29 82.8 88 ...........C.GC..A.......C... GGATCACCGGGCCGGTTCACTTCAGAGCGCAGAGCCCTGCTTTTCGCATGCGATGGTGCGCCGGCCACGCCTACGATCGCCGCACGGA 11709 29 82.8 154 ...........A.TG.......A..G... AACGCCACCAGCCTGGTCATGACGGCCAGGTGCTGCTCCCCGTTGCCCGCATCATCCCCACTGGCGTCCGCTAGTTGGGATGTTCGGGATGGTATGACGGAGTGGTTGAAAGTGCTGAGAAGCGAGCCCCACTCGGGAGTGCAGGTGATGCAGT CA [11691] 11524 29 96.6 32 ..............C.............. CACGCGGGCCCGATCCAGTCGACGCAGGCCGC 11463 28 79.3 32 .........A.A.AC.....-.....G.. GTCGTCCAGGCCCACGCGGGGTAGGTTCGCCC 11403 29 86.2 32 ...T.......A.GC.............. GCCTGGTGGTTCGTGTTGGCCACGCAGTCCTC 11342 29 89.7 32 ...........A.AA.............. CGCGACGTGGTCAAGGTGCTGGGGATCTTCGA 11281 29 96.6 32 ........................A.... CCATCAGGGCCTCCAGCACACGAGTGCGTTGT 11220 29 96.6 32 ............A................ GACCTCGCCGTCCGCCCCGCGGCCCTCCGTCA 11159 29 96.6 32 .......................A..... CGCATCGTCAAGGCCAAGCTCGCCGACCTCCA 11098 29 100.0 32 ............................. ATGCGGTCGGTTACGGCCTGTTGATACGCACG 11037 29 79.3 0 .....................CGC.CGG. | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 11 29 89.7 50 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : TGGTGGTGATGCGGACCCTGCTCCCCGCGCCCGCGGGGATGGCCCCGACTCGGCGTCGACGGCGGTGTCGCCGTTGATCTGCTCCCTGCGCTCGCGGGGATGGACCTCGGCGGTACGGCGGAGCTGCCCGACCGACCGAATGCTCCCCGCACGCGCGGGGGTGGTTGCACCGTGGTGGCCGGCGCCGTCACAACGGGCAAATGCTCCTTGCACCTGGGGAACGGCCCTTCGATGAGCTGATGGTGGCTGGTTGGTCGCTGCCCTCCCCCGGCGGGGCGGTACTGGTTGAGGACTTCTGCTGCCCGGCTTCGCCTACCCCCCCGTGACCAGCCGCTCTGCTCCCACCCTCTGGCAAATGCGGCCACCGTGTCATCGCCGGCGCGAGACCGTCGGGTATCGCTACAGCCACGCTCCCTCATTAGGGAGTTTGCCGTGTATGCCGGAGTCGGTGAGAGTGCTGAAAAGAGGGCCTTGCTCGGGAGACTCGCAGGTGAAGAAGT # Right flank : AGGTGGTCACGGCGGTCATCGTAGGGGCGCCATGGGTCCGGTTTCGGCCGGTTGCCTCGGTCTCGGCATCAACGGCTTCGCCACATGGGCAGGATGCGCCCATGGCCTTTACTTGGAAGATCCCGCCGTGGCAACGCAACGAGGACTGTACGCACATGGCGGTCTTGGTCACCGATGTTGGCAACGGTCAGATCGGCTTCACCACGGAGAGCGTGCGCGGTGACGACGCGAACGAAGCGCTCGCGGATCTGCTCATGGGGCCGGGCGGCGCCGGCGGTGCGGCGGTACTGCTGCCCGGTCTGGTTGCGGTGGTGGTTCGCCGAGGGATCGACGTGATGTGGATGGCGCAGCCACCGATTCAGGTGTCGCCGACAGGGAACGGCGAGGTGGAAATCGCTGTCGCCGGGGCCACAGAGGAGGATCAGGTGACCGCCTTCTCCACAGCGGACGCTCGGGCTTTCCTCGACCAGCTCCGAGCTGAGTACGGACCCAAGTAGCCG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8553-9444 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOH02000042.1 Streptomyces phaeoluteigriseus strain DSM 41896 Scaffold_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 8553 29 100.0 32 ............................. TGAGACGGGTCGAACTCAACTCCGGGGCCACT 8614 29 96.6 32 .........................T... GCCGAACGGTCCCTCTCCGACGCGAAGCGCTC G [8631] 8676 29 96.6 32 ................G............ TCGAACTTCTTGTCGTACGCGGTCTGTACCGC 8737 29 89.7 33 ...........G.AT.............. AGTGACGTTGCGCTGTTTTGGCCGCCAGGATTC 8799 29 89.7 32 .........A.....C.........T... ACCGACCTCATGCCCGAGGACCGCCAGGACTT 8860 29 82.8 160 .C.........G.CT...........T.. AGTCTCCGTCTGCGGGCCGTCGTCCCGGCGCTGTAATGGGGCCGGCCGACAGCATCGCCGCCAGCGAGGCCTACTTTAGGGCTTATTTGGCGGTATGCCGGAGTCGGTGAATGTGCTGAGAAACGAGCGCCGCTCGGGAGAAACTTGCAGGTGGCGCAGT T [8885] 9050 29 96.6 32 ........T.................... AAGACGGTTGTGTCGCATGCGTCGACGATCGA 9111 29 96.6 32 ........T.................... CGTCCCAGCTGTTGGCGGTGCCGTTCTCGGCC 9172 29 100.0 32 ............................. ACGACGTGGATCGCCACCATCAGCGGCGTCGG 9233 29 100.0 32 ............................. GGTCCTGTCTTCGCGAGGGACCCCGAGCTGGA 9294 29 96.6 32 .........................T... AAGGCGTACCTGAGCGCGTACGTCGTCGTGGA 9355 29 82.8 32 T...............TC....G..T... GGCCTTCGCGAGTCCCTCGTCGGACGGGTCGA 9416 29 82.8 0 .............C.......G...T.TA | ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 13 29 93.1 43 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GCTCGCGCGGGCCCTCTTCATCAATGCCGCCGGGTTCACGGTGACACCCCGTCACCGCGGACCGGGCAATGTGAGGCCGGCCGACAGCATCGCCACCATCGAAGACCGTTTTAAGCAGTTTTGAGTGGTATGCAGGAGTCGGTGAAATTGCTGAGGAACGGGACTCGCCTGGGAGAAACTTGCAGGTGACGCAGTCTGCTCCCCGCATGCGCGGGGATGGTCCCGTCTTGTCCGTGACGGGCCCAGTGCTGAGTGGTTGCTTCCCGCCCTCGCGGGGATGGCCCTCCGGCCTTCATCTTGGGCGGCGTAGCGGGTCCCCAACTCCCCTGCACGGGAAGGTCCCGGCGTCACCGGCTGGGTGATGGCGGCCAGGTACTGCTCCCCGTTGCCCGCGTCATCTCCACCAGCGCCCGCTGAGTGGGGTATTGAGCAATATGCCGGATTCGGTGAAAGTGCTGAGAATCGAGCTCCATTCGGGAGAAACTCGCAGGTGACGAAGT # Right flank : ACATTCGTTCGCATTCGTTGCTGACTGGCAGTCTCGCCCGCGATCGGCGTGCCCCTCGAGGACCTCGTGCGCTGAGCGGCCGCCCCCGCAACGGGGGGTGCGGGAGCGACCGTTCTCCCGTGGCCGGCGCTGACGACGGCGCGGCCAGGCGCGGGAGTCCTGGGTGGACATGACGATCGGCAGCTCAGATGTCCCAGGCATCTGCCGGGCGGTCGAGCCAGGCCTGCTGGCCGGTGGCGCACTGGCCAGCATCTTCGCCCTGCGAGGCCTGACCCTGCGGCCCATCGTCCACAACCACCCGCCGCAGTACCAGTTCAACCCCGCGCTCCACCTGCACGCCACCCTCCCCGCCCCGGCGGGCGACGACGACTTCGGCGACGAAACCGACAACGTCCACCCGCTCCAGCGCTGACCCCGGTCGGTCCGCCTGGCCCTCGCCCACCCGCAGCCGCGGGGCCGGGCGAGTGCCGGACAGGCCGACGGCCGCCACGAACCACCCC # Questionable array : NO Score: 4.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //