Array 1 1737908-1736937 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017520.1 Mannheimia haemolytica strain 1609 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1737907	    32	 100.0	    36	................................	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1737839	    32	 100.0	    35	................................	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1737772	    32	 100.0	    36	................................	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1737704	    32	 100.0	    35	................................	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1737637	    32	 100.0	    34	................................	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1737571	    32	 100.0	    36	................................	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1737503	    32	 100.0	    34	................................	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1737437	    32	  96.9	    34	.....................T..........	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1737371	    32	  93.8	    35	G....................T..........	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1737304	    32	  93.8	    34	G....................T..........	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1737238	    32	  93.8	    35	G....................T..........	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1737171	    32	  93.8	    35	G....................T..........	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1737104	    32	  93.8	    37	G....................T..........	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1737035	    32	  93.8	    35	G....................T..........	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1736968	    32	  87.5	     0	G.........T..........T.T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        15	    32	  96.5	    35	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 8.84
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCACCTACGCGTGGCTGCGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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