Array 1 171235-173216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171235 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171296 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171357 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171418 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171479 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171540 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171601 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171662 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171723 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171784 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171845 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171906 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171967 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172028 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172089 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172150 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172211 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172272 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172333 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172394 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172456 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172517 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172578 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172639 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172700 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172762 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172823 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172884 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172945 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173006 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173067 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173128 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173189 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189724-191400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189724 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189785 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189846 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189907 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189968 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190029 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190090 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190151 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190212 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190273 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190334 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190395 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190456 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190517 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190578 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190639 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190700 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190761 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190822 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190883 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190944 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191005 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191066 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191127 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191188 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191249 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191310 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191371 29 93.1 0 A...........T................ | A [191397] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //