Array 1 96397-95637 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKE01000012.1 Escherichia coli strain HH-NP027 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96396 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96335 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96274 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96213 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96152 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96091 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 96030 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95969 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95909 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95848 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95787 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95726 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95665 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCAGCGGGGATAAACCGCCGCCGTCGAGTGTAATACCCTGATCCATCGC # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108-1539 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKE01000004.1 Escherichia coli strain HH-NP027 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 169 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 230 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 291 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 352 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 413 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 474 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 535 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 596 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 657 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 718 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 779 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 840 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 901 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 962 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1023 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 1084 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1145 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1206 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1267 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1328 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1389 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1450 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1511 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //