Array 1 13295-14953 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSQ01000155.1 Thiocystis minor strain DSM 178 scaffold0155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 13295 31 100.0 34 ............................... TCCCGCATCGTCAATCACAACGCGCGGAACAGGG 13360 31 100.0 34 ............................... ATTGGCCTCGTTTCGATGGGATGCCATTGACCAA 13425 31 100.0 34 ............................... TTCGAGCAAGCCTTCGGTCGCCGCGCCGCCCGCG 13490 31 100.0 35 ............................... AAATCGCCGGCATCGAAATCGATGACGCTCGGCGA 13556 31 100.0 34 ............................... GCCGATTGTTTGATCGGCTGCAAAAGTTAATGCG 13621 31 100.0 33 ............................... GATCACAGCCAGGTCGACTGGATAGGCTCCCAA 13685 31 100.0 33 ............................... GCCTCACAGTCTTTACTCATGTCCCAGGCCCAT 13749 31 100.0 35 ............................... ATTGAACTGACGCCTGCTCGGTTGACCGTGGTGTC 13815 31 100.0 34 ............................... CCGGACCTACGTGGACCGCGAAGGCAAGGCCGAG 13880 31 100.0 34 ............................... GCCGTGTCGAAAATCTCGCGAATCCGCACCAGCT 13945 31 100.0 34 ............................... ACGCAGTATTTCGGCGCAAGGCCAGATGCGGATG 14010 31 100.0 35 ............................... CTCGTGTGAGAGAAGGTAGCGCGTATGCAGACCGT 14076 31 100.0 34 ............................... ATGTGCTCGGTGATCTGGACACACTCGATTCCTG 14141 31 100.0 34 ............................... AGCCCGACTAGGTTAGTGTCATTGGGAAACACCC 14206 31 100.0 35 ............................... ATGAAGGCGAACGGATTCTCGCCGGATCGCCTCTC 14272 31 100.0 35 ............................... CGGTATCCGCGCGCCTTCCCGAGCGCCACCAGATC 14338 31 100.0 36 ............................... ATCCATGCGCGTCAGGTCGTTAACCCATCGCGAACC 14405 31 100.0 34 ............................... CTCGAAAACCAAACCATCACCACGACGTATAACA 14470 31 100.0 34 ............................... CTAGAGAATCAAACCATCAGCACGACCTACAACA 14535 31 100.0 33 ............................... TTTAGCCGCGCGATTTTTCGCCGATGCGGCCAG 14599 31 100.0 34 ............................... AAGAATCGATGGTCCCATTTCGGACTCATGCGCC 14664 31 100.0 34 ............................... GCGACGGACGCGAGGACAGCGGCGCGTTTCTTGT 14729 31 100.0 34 ............................... AAGCAGCAAACGTCGTATTCGACACCTGGTTCCA 14794 31 100.0 32 ............................... CTGCCCAGGGGAAGGCCGAGCCGTTCGCCCAT 14857 31 100.0 35 ............................... AGCATCGAAGACCCCGACTTCCGCAACCCTGACAA 14923 31 96.8 0 ............T.................. | ========== ====== ====== ====== =============================== ==================================== ================== 26 31 99.9 34 GTCGCCCCCTCACGGGGGCGCGGATTGAAAC # Left flank : TTTCGTGTGGCGTTAGAGGACCGAGATCATGTATGTGTTAGTGACCTATGACGTCTCGACCGTCACCGAGGGCGGTGCCCGCCGTCTGCGGCGTGTTGCGAAAGCCTGTCTCGACTCCGGGCAACGGGTTCAGAACTCGGTTTTCGAATGCAAGGTCGATCCAGCGCAGTTGGCGATGCTGAAAAACCGACTGTTGGGAATCATCGATCCCGCAACCGATAGTCTGCGATTCTACAACCTGGGCGCGAACTGGCATTCCAGGGTAGAGCACTATGGCGCCAAGCCCAGCTTCGATGTAGATGGACCGCTTGTGGTTTGACGCAGCGCGAACCCTGGGCGATCGCCATGAAGTCGGGAGGTTCGCGCTGCTTCTAACGTCATGACCGTCAAAGCATTTTCCATGACTTTGAATGTTTAGGCTGTGGATAACCCGTGGCATAGAGGCGGTTCGCGCGAAAGCATAGATTTTTTCTTTAAACGTAATGAGTTAGGATCGTGAG # Right flank : GACGCTCACGCAATCAGCCGGCAATCTTGTGATCCCCCGGTGTCAGGATAGAAGTCGCCTCCCTCTGGGAGGAAGTGTGTGAGGATGGGGGCATGACCGTCCTGGGGCCTAGCGCCCCTTGGGCGTCGCTGTCCAGTCGCCCGTCGGGCGACTGGACAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19376-18373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSQ01000099.1 Thiocystis minor strain DSM 178 scaffold0099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 19375 31 100.0 34 ............................... GACTGCGGCGCCTAGGCCCCAACGCTGGCCGATC 19310 31 100.0 35 ............................... GCCGCGAAGCTGGAGCGCGACGGCCTTCGCCTCGC 19244 31 100.0 34 ............................... TCCCGCGTCAGGTACGCGATGCCGAGTCCAATGC 19179 31 100.0 34 ............................... CATCCGTAGCTGGCCTTGAGGCGGTCGCCTTCGC 19114 31 100.0 34 ............................... CGTGACAACCCGCCTGATCCCCGCCTGGATGATC 19049 31 100.0 31 ............................... ATTCATCGATGTCGGATGATTCCGTGATGGC 18987 31 100.0 34 ............................... ATGAGCGAGCATGGTTTAGGACCTCCAGGTCATT 18922 31 100.0 34 ............................... TTTCTCACTGTCACGCTGTTGAGCTTCGGGTTTC 18857 31 100.0 34 ............................... CGCTTCGTCGAACATCACCGGCAGCGCATCGGAT 18792 31 100.0 34 ............................... GATCACGCCGCACCATCCAGCCGGACGGCGAGCG 18727 31 100.0 34 ............................... CACGCGGCATTGAGGCGCGCCACCGCCTGCTCGT 18662 31 100.0 34 ............................... TTGCGTTGGTCGCGCAACATTGACAGCAACCGGC 18597 31 100.0 34 ............................... ACCGTCCGCATGTGCGATCCAGCACCAGCCTTCA 18532 31 100.0 33 ............................... GACTCGCCTGAATGCAGAATGGCGAAGCTGTCC 18468 31 93.5 35 T...........T.................. CTGCCGGCGTCGCGGCTGCCGCTCGCCCAGGCATT 18402 30 96.8 0 .................-............. | ========== ====== ====== ====== =============================== =================================== ================== 16 31 99.4 34 GTCGCCCCCTCACGGGGGCGCGGATTGAAAC # Left flank : CGGCACGACGCGCAACTGGAAGCCCGAGACCACGGTCTTCCTCAACCCTGGAAAACCGACCACCACGGAGCATCAAAACCAACTGACAACGACATGACCAATGCGACAACTACCTTGACACTTACCGTGA # Right flank : AGACAGGCGCCGACAGGAATAGATCGCGAACCACGTCGCCCCCTACCGTGCCTCGCGCTGACGCTGAACGAAGTCGCGCATCAGCTCGCGCAGAATCTGCGAGGCCGGGCGGTGGCTGGCCTCGGCCTTGGCCATGAATTCGGCGCGCAGTTTGGGTTCCTGCTTCATGGTGAAAACCGGCTTCGTTGGACATGACGGGTCACTCCAGCGCAAGAGTACTGATCAAGTATCGATATCGGTCATGACGTTTCGTGATGTGCATGGCGTCATGCGGCGACCTGTTTGGCCAAAGCAATGCCCGAGATAGCGAGTTAGCCGGACATGAGCTTGGGAAGGAGCAGGCCGCTGGCTTGGGCGAGCTGTCGGTTCCGCTGAGTCAGTCATTTAATCTGGTTGAATATTGTGGCTGCCTCGTCGGCGCTGAAGACTCAAGCCGCCAGTACGCACAACGGCACCATCAATTCGGCCTCGCTCAGGCCGCCATGGACGCCGATCTGAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //