Array 1 1159376-1155795 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTM01000001.1 Listeria monocytogenes strain NRRL B-57063 DZK39_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1159375 29 100.0 34 ............................. TAAAATAAATAAAGAAACTCATTAGGTTGCTTAT 1159312 29 100.0 36 ............................. TCCGCTGTTACTGGTGCAGTAACTTCACCAGATTGG 1159247 29 100.0 36 ............................. AAAAGAGTATCTGCACCATTAGCTAATTCTTTAATC 1159182 29 100.0 35 ............................. TCAAATATATGTCTGAAATGATTTCGGACAATTTT 1159118 29 100.0 34 ............................. CAAATTTTGCCACAAATGCCACAAAAACAACGGA 1159055 29 100.0 35 ............................. AGAAAATAAAATATTCATCGAGGAACATCGAAAAT 1158991 29 100.0 37 ............................. AAAAAAGAACATCCTCTCAAAAGGATGTCTTTATTTT 1158925 29 100.0 36 ............................. GTTGTTCCACTCCCGCCGCTTACACGTCCGACTTTC 1158860 29 100.0 37 ............................. GATAAAAGCGAACTTGTGGACGAAGAAGAGAATAAAC 1158794 29 100.0 36 ............................. ATATTTCTTTGTATGTCCCATTTTTGGAGGGTGATT 1158729 29 100.0 36 ............................. TCAACATAGCACCGTCGGCAAATGAAAGTCCTAAAG 1158664 29 100.0 36 ............................. CCTGTATCACAAGCTTTAGCTACAAAACTCTCTCCG 1158599 29 100.0 38 ............................. CATTTTCAAGAATTTCATGTATAAATAATCTCCCTTTT 1158532 29 100.0 35 ............................. TCATTTGGCACTAACGCTCACCGCCTTGCATCCAT 1158468 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 1158404 29 100.0 37 ............................. TGTTAAGTTTTATATGGAAGCTGGCATGAGTGCGGAG 1158338 29 100.0 34 ............................. TATGCTTAAAAGCTGCTTGGTCTAAAGCGAAAGA 1158275 29 100.0 37 ............................. AAAAACATGCTAGAACCAATACCGCGCTGGGAGTTCG 1158209 29 100.0 35 ............................. GAATCCAATCACCTTCCGCAACATCGTATTTCATT 1158145 29 100.0 35 ............................. ATAAAAGTTGCTATCATCGAACCTATTGCAAAAAT 1158081 29 100.0 34 ............................. TCGTTATCCTCATAATTTTTAGCCGCTAATCGAG 1158018 29 100.0 37 ............................. GTAGAAACGTAGAATCTTACTTTTTTATCGTTCATTC 1157952 29 100.0 35 ............................. GCGTTAACAGTTCCAATAGCAAGCGCGTCTGTACC 1157888 29 100.0 35 ............................. CAAATTATCAATAATTATACTAGCTATGAGTTTAG 1157824 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 1157760 29 100.0 34 ............................. CGGATTCATTTGCTGGTTAGGTCGTTTGTTAAGC 1157697 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 1157632 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 1157567 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 1157502 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 1157438 29 100.0 36 ............................. TCGACTGAGTCCCACGTCCACGTGATTGAGTCATCC 1157373 29 100.0 34 ............................. TATTCTCTTTTAGCTAGCTCTAGCTGCTGCTCTA 1157310 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 1157247 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 1157181 29 100.0 36 ............................. GAAAAAAGGCATATGTATCTCAAAGCGAACGCGAAA 1157116 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 1157052 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 1156986 29 100.0 35 ............................. ATTTATCACTGCGATTAAATCGGGGGATTTTCAAG 1156922 29 100.0 36 ............................. TTTCAACTGAAGCTACATGTACATGAATATTATCTG 1156857 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 1156792 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 1156729 29 100.0 38 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTTT 1156662 29 96.6 36 T............................ ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 1156597 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 1156532 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1156468 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1156404 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 1156341 28 93.1 36 ...................-.....G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1156277 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1156211 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1156145 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 1156080 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 1156016 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 1155953 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 1155890 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 1155824 29 93.1 0 .......................C....C | A [1155799] ========== ====== ====== ====== ============================= ====================================== ================== 56 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1177011-1176272 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTM01000001.1 Listeria monocytogenes strain NRRL B-57063 DZK39_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1177010 29 100.0 36 ............................. CGATAATAATGCCTAGTTTTTTCATTAACCCAACGT 1176945 29 100.0 36 ............................. TAATCAGAAAGAACATATTCGTCAACTTTTTCTGGC 1176880 29 100.0 34 ............................. GGCGTTAACAATTACCTGACGGGGTTAAAATCAA 1176817 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTCAAT 1176751 29 100.0 34 ............................. GATCATTTCGGCAAGTGTCCCAGCGGCTGACAGA 1176688 29 100.0 35 ............................. TGAAGTTTTCGAAAAGCGCTCGATTTTTTGCTAGT 1176624 29 100.0 35 ............................. TTAAAAAAGGGTCGTCTGCAAAATCAATTATTCAA 1176560 29 100.0 34 ............................. ATTGATGCCATAATCGGTTCTAACAACGGCATTC 1176497 29 100.0 36 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGAA 1176432 29 100.0 37 ............................. CAAAGAATGAGAATCTCACAAGTTGAAGAACTTTCGA 1176366 29 96.6 37 ..............A.............. GAAAAAGCACTTTTCAGCACTCGTTCGTTTTCTTTTT 1176300 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 98.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGAGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 504162-505320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTM01000003.1 Listeria monocytogenes strain NRRL B-57063 DZK39_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 504162 36 100.0 30 .................................... CGATTTTGTATGGAGACTTGCGACGAAGTT 504228 36 100.0 30 .................................... TCAAGTGGAAATTCAAGATGTTATTCGTAA 504294 36 100.0 30 .................................... TTCTTTGGTCTTCACTTGCCCCGGTTTTCC 504360 36 100.0 30 .................................... CCCGCGGCGAGAGGTAGGGCGAAATCCTTC 504426 36 100.0 30 .................................... AATATGTGTACATTATTTAACTTCCTTTCT 504492 36 100.0 30 .................................... TGAACAAAGCAAAAAACGAACGCATCGAAT 504558 36 100.0 30 .................................... TGGAATAATTGATAAAGTAGCGAAATTTAT 504624 36 100.0 31 .................................... TAACAGAAGCGGAAATTAAAGGTATGCCCGG 504691 36 100.0 30 .................................... TCTATTACTTTCGTCCCTGCATCTTCCCCT 504757 36 100.0 30 .................................... ATCCATAACCGGAATAGATGGTGTTATTCC 504823 36 100.0 30 .................................... TGATACTGCGCAGGGTGATGCTAGTCTTGT 504889 36 100.0 30 .................................... AAATGCGCAGATGATGATACACGAACCGGC 504955 36 100.0 30 .................................... TTTTAAATTTAATCTTAACGGATTACTACG 505021 36 100.0 30 .................................... CTGAGTATTAAAGTTATGGCGTAATAGATG 505087 36 100.0 30 .................................... AAATGAAAAATAATCAACACGAAAACATTG 505153 36 100.0 30 .................................... TGACCGAGAATATATTATAGCTCCACTTTT 505219 36 100.0 30 .................................... GAGTATCTCAATTTTCAGCAGAAGGCACCG 505285 36 83.3 0 ........................CA.C.A....CA | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGTTGCTCTTTGAAAATAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAAGAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAATCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAGGTTTTCTCGCCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTATAAGTGAAGGGACCTGCCGCTGAAAGGTGAGGGGCAAAATAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //