Array 1 12015-10165 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLNN01000051.1 Limosilactobacillus fermentum strain LF2 contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 12014 36 100.0 38 .................................... GCTTAACCATGTATACTAAAATTGAAAACCAACTGTAC 11940 36 100.0 40 .................................... TCTCGCGGACCCAGATGTCCTTTTTAGACTTGTCCCACGG 11864 36 100.0 35 .................................... TTTCATTTTGATTTCTCCTATTATCCGGTTGTTTA 11793 36 100.0 37 .................................... ATTGTCAATACTTTTTTTTAGTTTTCTTTTCTTGCTT 11720 36 100.0 35 .................................... GCAATCTATCTAACAGGGCGTTATAAATAGCAAAG 11649 36 100.0 36 .................................... CCTACATATTTCATTTTAACTACCTCTTTCTTTGTT 11577 36 100.0 38 .................................... TTACTTGCGTTAATGATAAAGTTAGATTGCATGATTGA 11503 36 100.0 39 .................................... GCACTTCCCTAAAACATAAGGTTTGTTGACGCTGTATTT 11428 36 100.0 34 .................................... CTGATTATTTAATTCTTCGTAAGTCATAGCTGCG 11358 36 100.0 34 .................................... CGGTTGATTAAGTATCCATTGGCTCGCATCCACT 11288 36 100.0 39 .................................... CCTGGCCCGGGCTTTTTCCTTGCTCCTTGATTGTCTTAA 11213 36 100.0 35 .................................... TTTTTGGATTTATTTTATAGTTTCGATATGGTTGT 11142 36 100.0 40 .................................... AAAACTACTCGATTAATCATTATTCCACCTCAATATCAGT 11066 36 100.0 36 .................................... GTTAGTGGCTTGCCCTTGTATGGATACATAGCTTGA 10994 36 100.0 35 .................................... TCTGCCTCTGAGTATGGGTCGAAGTCTTCGTACTC 10923 36 100.0 40 .................................... CGTTAACCGGCAATATTCACACTTCCCACAGTGCTTCGGT 10847 36 100.0 34 .................................... GTTCGCCATGCTTCTCTCCGGTTTCTTCAAATGA 10777 36 100.0 38 .................................... GTTAGACGAGTTTGCTCTGCGTAGATGACGTGGCGCTG 10703 36 100.0 36 .................................... TGACGTATGTCAATCCTTCAGTGCTGTTCATTACCT 10631 36 100.0 34 .................................... AAAACAAATTGAAGTCAATGGACTAAGTAGCTAA 10561 36 100.0 36 .................................... TAACATATCTAGGTTAAAAGTCAACACTTTTTTTAT 10489 36 100.0 35 .................................... CCCAATAATCCATGGATCATTATCAGTAGTGTCCG 10418 36 100.0 34 .................................... AAAGCTAAGCGTGCCATCATCTGCCTGGTAAGTA 10348 36 100.0 37 .................................... ACAAACTGTGATTGTTTCATAATGATTACCTCTTTCT 10275 36 100.0 37 .................................... AGTTGCTACAATGTAAAGTTTCTTTGAGAACATTTTG 10202 36 88.9 0 ...................T.T....G........A | G,T [10168,10170] ========== ====== ====== ====== ==================================== ======================================== ================== 26 36 99.6 37 GATATGAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCGTATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAAGGATTCGACGTCGAACTCCAAAGAAAATGAAGATGAAATTTAATGGGGCACTTAAGCTAACTAAGAGCCGGAAAGTTCGCTATAAGTCAAAGAAGAAAGATGGTTCTGTTGAATTTCATGAACTCATTACAAACACCGAAAATCTCTATGAAATGGGAAAATGTGGGTTCAAAATTAAGGAATTGTAATTTCAATTACTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGCCCAGAAAAAGGGCCAGGGAGGCTTGAATGAGTACCCGCCTGGTTTAATTGAGGGCATAAATTTGTCAAGTTATCCTTGATTTAGCAACAAAGTTAGCAGGATCG # Right flank : AAGCGAGAGCGTGTATCGAAATCCTGGAATTTCAATACACACTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGTATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGAGCGAGTGATTGAATATTGCATTCTCAATCACATTGGAATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGTAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATGAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 631-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLNN01000129.1 Limosilactobacillus fermentum strain LF2 contig_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 630 36 100.0 30 .................................... CGGCCCGGCTTTTCTTTTTTGAATGCTTAA 564 36 100.0 30 .................................... ACTACCGCGCCGGGAAAATTAAGATTGTTA 498 36 100.0 30 .................................... TTTCTGGCGGTAAAGATAGTGGGGTCATGC 432 36 100.0 30 .................................... ATCTCACCATTCTGTTGATACTTACATACG 366 36 100.0 30 .................................... AAGACGTGGCTAGACGCTATCAAACTGACA 300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : | # Right flank : CTTCAATGCTTTGCTTGAGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACTTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAAGTTGAATTAAATTTAGAAGATGACGAATTAAAGGAACTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCCGAGATCCTTGATGAAATTCTTAAGTCCGAAGCGACTGAGCAGATTAAAGCTAAGGCTTATGAACGTTCGGATGAGCGAACCAATTCACGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //