Array 1 65599-65896 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000034.1 Alkalihalobacillus clausii strain 7543 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 65599 32 96.9 35 ...........A.................... GCATTTACCGAAATAATCTAGGTAGACATTTTCCA 65666 32 100.0 33 ................................ GCGTAGTCCACAAACGGATCGCCCTCGGTAACT 65731 32 100.0 35 ................................ AGCGCATCGGGGTCGCCAACCCACTTTTGGCCGCG 65798 32 100.0 35 ................................ TATGAAGCCAGTCCTAAAAATTCGATAGGATTCAC 65865 31 78.1 0 ............T........AC..-...TCA | A [65875] ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AGCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAGCCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAAAATGCACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGGAAATAGAAGCGAAATCAATCGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATTCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 130043-130551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000034.1 Alkalihalobacillus clausii strain 7543 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 130043 32 100.0 48 ................................ GCTGACCCGTTTTTCAACCGGTATAAACAAAGCAATGATGCCAATCGC 130123 32 100.0 36 ................................ GCTGACGGCGCAGAAGGTGAAGGCGCTGGCGAAGGT 130191 32 100.0 33 ................................ CAGAATTCTAGTACAGGATTGTTCTTTTCTTTA 130256 32 100.0 33 ................................ ATTCGGTTAAACTGATAAGCCAAATAGCTTACC 130321 32 100.0 34 ................................ CACAGCGGTGAAGGCAGATAATAATGCAAGGCAG 130387 32 100.0 35 ................................ TTTTTATACCTTACAATCTCCCTTTCGATCCGACG 130454 32 100.0 34 ................................ CCAATTGAATTGATCGAACGTGTCATTAATCTGC 130520 32 96.9 0 .C.............................. | ========== ====== ====== ====== ================================ ================================================ ================== 8 32 99.6 36 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GCATTCCAATCATCGCGATTCAAATATTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGACGGGGCGAAGTTAAGCTTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTGAGAAAGCATGTATTTATGAGTGGCAGTGGGGCCAGTGTGTGTGGATGGGCAATTGCTTGCAAAGAAAGGCATCGATTTTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGAAAATAGCCGATTTTATAGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAATGTGTGTAAAAGTGGTGAAATGTTGTTAGTTTCCCTTGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCTGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7248-7939 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000012.1 Alkalihalobacillus clausii strain 7543 contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 7248 32 100.0 35 ................................ ATTCTTTGGGTTACGTACTCCCCATATGTCTTTAC 7315 32 100.0 33 ................................ AATGCGAGTAATTAGCTTATTCAATTTATCAGT 7380 32 100.0 35 ................................ ATACGCTTGAACAAAGTGTCCACGTAGTGCGTTTT 7447 32 100.0 34 ................................ TGGATTACTCCGCCTAGTCTCTACACCTTCGCCG 7513 32 96.9 34 ...........T.................... TACGAACCTTTGTTTGATACATTAAAATCTAGGA 7579 32 100.0 34 ................................ TCGCTTACAGCGCGCCCTGAGCCTCCACATGAGC T [7587] 7646 32 96.9 34 ...........T.................... TTTAGTTTTGGCATTAAACCAATTTCACACGACC 7712 32 100.0 34 ................................ CTCTTCATTTGCTGCAGTAGAGGGGTCGCCACCA 7778 32 100.0 33 ................................ CCCGCTCTATTTCCTGTAACGTAATCCAACAAC 7843 32 96.9 33 ...........T.................... TAACCGAAGAAGACCAACAGGATGAAGTTAAAA 7908 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.2 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TAAAGTTTTATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCCCAAATTCACACATATATCAAACAAGAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGATCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAAGAGCGGCATTTTCCTATAATTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TTCGAATGTTGCCGTCTTGTTGTAACGCATGTTCGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 71906-72535 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000012.1 Alkalihalobacillus clausii strain 7543 contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71906 32 100.0 34 ................................ TTTTGCACAGCAGCTTTTACGCCATGCGCTTGCG 71972 32 100.0 35 ................................ ATCATTCAGGATTTACAAAAGCAGTGCGAGCAATT 72039 32 100.0 34 ................................ AACAAGGGGTGTTAGAACGTTTAGGAGCAACACC 72105 32 100.0 34 ................................ AAAACTATCTCAGCAAGCACGGATACACCAGCAG 72171 32 100.0 34 ................................ TTGATTCCCAAGCAGAATTATTAGATTGATAAAA 72237 32 100.0 34 ................................ TGATGCAGGCAAAGCCATGCAACAATATAACAAA 72303 32 100.0 36 ................................ CTCCAAATAGCGCCTTGCCTCCGAAAGGTTCCAAAA 72371 32 100.0 34 ................................ TTTAATAAAGTCCTTGTGCAGTAAGTTAAACTCC 72437 32 100.0 34 ................................ CGCGTTGATGATGTCCATGTAAGGGGCGAACTCG 72503 32 93.8 0 ..............................TC | A [72529] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.4 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGACAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATGCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGCCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATAACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACTGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10678-10907 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000035.1 Alkalihalobacillus clausii strain 7543 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10678 32 100.0 33 ................................ GACAGTGGAGGACATTTTCCTGCAACTTTTTTC 10743 32 100.0 34 ................................ CCAAGACTGTTTTAGCATATCTATTACTTGGGGT 10809 32 100.0 35 ................................ TTCGAAATACCAGTCGTTTTGGGAGTGGTATTGAA 10876 32 81.2 0 G..............GT..T.......A...A | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 34 ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AACTGTATAGGTAAATGGAAACATCAAGATACAGAGGAACAGCGTGATAATAGAGTTGTAGAAACAACAGATCAAAGGGATGAAATTTTGCGAATTGCCACCTTTTGTCAGGAAATAAAAGACATAATTTCATATCCAAAAGGTAAAGTGGAGGGTGCTGGGAAAAATTCGGAGGCATCTCATCAATGGTTCACATTAAATAAAAGAGATGAGAAGCGAATCCTACCAACGATTCAAGAAGAACTATTTAAAAAAGATAACTCTCATTTGAAAGAACTATATGAAATAAAAAATAAACGCTAACAAGAAGCAAATATGTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTCAAATGTGTAATAATATGTGTAAAAGTGTTGAAATGTTGTTGGTTTCCCATGATATGATAAAGAAAAGCAGCAGCTTTCCCCTATTATTTATTGTTTCACTTCAAAAAACAGGGGAATTTCGCT # Right flank : TATATTTAGATTTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCATAATTTGACGAGGATAAAATGGCAACGGCGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAAC # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11192-11356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000036.1 Alkalihalobacillus clausii strain 7543 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11192 32 100.0 33 ................................ CACAATGAGACAGCCATACTCTCCTCCTTATTG 11257 32 100.0 36 ................................ TGTAAACTGTCCGTTGCCGACTAGACAAATGTGATA 11325 32 93.8 0 ....T......A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 97.9 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTGCTGTTCGTGGTATTAAAATGTGGTGGGATTAAAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATTACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTAACTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCCACATGAATCGACGTTCACTTGCGAAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATTGCTTGCCATAACTTTTGATAGGAACCTTCTTCGAATGCTTCTACTACTAGTTTTTCGACGCCAACTTGTTGCTCCATTAGGCTTTTTTGGAATCTAGGGATTTCTCCGACAACCAGTTTTTCGGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCGAAGTTCTTGATGGCGCCATTGTTTTCGACAATCATTAACATC # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18262-18956 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000036.1 Alkalihalobacillus clausii strain 7543 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18262 32 100.0 34 ................................ GTTACAGTCAGACATTTACCGTTGACAGATACCA 18328 32 100.0 35 ................................ GACAGCTTGAAATGAAGTCAGGTGTTTCTAACGCC 18395 32 100.0 36 ................................ ATATTTCTTTCGGCCATTAGTAGCCTTAAGTTGTTT 18463 32 100.0 36 ................................ ATCTCAAAATACAACGAGTCGTAACCGAATATTTTG 18531 32 100.0 33 ................................ GCCGAAGCTATCCAAGTTAGCGAAAACGCCGTA 18596 32 100.0 32 ................................ GACAGCAACCGACACGATTATCAACCTTTTGG 18660 32 100.0 34 ................................ TAGTTTGTTTACAATCATTTTAAGTAAATCATCA 18726 32 100.0 34 ................................ CATTCTGATGTGCCATACCATGAGGGGCTTAGTC 18792 32 100.0 35 ................................ ATGACAAAGTAAATGTTTACGAGCAATTCCGTTCT 18859 32 100.0 34 ................................ CGTTCAGGTAGCGGTCGCTCGACAACCTTTATTT 18925 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCACTCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAGATGTTGAGGTATTTCGTGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGCATTCAAATATGGGTAAATGTGCGAAAAAGTGTTAAAATGTTGTTGGAATCCCATGGTATGATATAGGTAAAGAGCGGTTTTTCTCTAGGATTCATCAATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : TCCATAGTCTATGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTTTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGGAAAACTCCTGGCTCTGTCTGCTCTTTTTAAGAAAGTACAAACTCCCTTGGATTTGTAAAATCATGATTAAATGCATGATTAAACGGCTGAACCGACCCGTTCGATGTGGATTTTTTGCTGATATTGTTCGGCTTGTGCAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTCGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 30949-31446 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000036.1 Alkalihalobacillus clausii strain 7543 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30949 32 100.0 32 ................................ ACCAACAATGCGCACGTCTGTCGCTTCTTCTC 31013 32 100.0 36 ................................ CACAACGGCGCAGGAAAAGCTTATTACCATAAGGCC 31081 32 100.0 34 ................................ GCCTGTTGTATTTCCTAAACTTGGAGCAACTACA 31147 32 100.0 35 ................................ ACCTCCACTAAATGGTGATATTACCCCTTAAAATT 31214 32 96.9 34 ...........T.................... ATTTCACTGGACGAATGTACTTGATTATAATCAC T [31223] 31281 32 93.8 35 ...........T........A........... CAATACGTCATGACTTCCCCTAACACTGGATGGGT 31348 32 93.8 33 ...........TA................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC TT,G [31357,31372] 31416 31 78.1 0 ...A.....C.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 95.3 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGAAGCATGGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATCGTCGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACGGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCCAACAGGTGCTTTTTTGAAAAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTCGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCACACATAAAATCTCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGCAAAAATATGTGTCAAAATGGTGAAATGTTGCTCGTTGTCCATGATATGATAAGAGAAAGAGCGGTTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCCGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGAGTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAACCATTTATACAATCAATTTTTTC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 35375-36267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCG01000036.1 Alkalihalobacillus clausii strain 7543 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 35375 32 100.0 33 ................................ TTGTTTAAGAGTTTACCAAAAGAAGATGGATCG 35440 32 100.0 34 ................................ CGTCCATGCTTGAGTGTGATAAGCCCGCATAACA 35506 32 100.0 36 ................................ TTTCTCCCTTTTCCTTACCCTGTAATCGAACATACG 35574 32 100.0 33 ................................ GATCGGGACTTGGAAATTGCAGAACGGATTATG 35639 32 100.0 35 ................................ AAACAGCTTGAACACCTTGGCTAGTTCCAGCACGG 35706 32 100.0 35 ................................ ATAGCCTCAATCATTTCGTTATCCACCTGTCCTGT 35773 32 100.0 34 ................................ TTTGGAAGTATCCAATCTGCAGCCTCATCAATGC 35839 32 100.0 35 ................................ CACGCTATCATAATATCACGTTTTTAGACCTCAAA 35906 32 100.0 33 ................................ TGGTAGCAATACAAAGTCGCCACCATCCTTTTC 35971 32 100.0 34 ................................ TCTCACTGGAATTGTATAGTTAACGATGACCTTC 36037 32 100.0 35 ................................ GCTTGTTGTGTTGGTAAGAATACCACAGGGTCTAA 36104 32 100.0 34 ................................ TTTCTTTATGACGTTCCCTTTCTCGTCCTTCATC 36170 32 100.0 34 ................................ ATTAACTGGAGAAATATTATCGACCGGTTTGTTC 36236 32 93.8 0 ..............................TC | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CAAATCTTAACATTCTAATGAATTTTAGCAGCAGTAAAGGAGAATGAATAGTCTATAATAACTTGTTTCTATATGCTATAATTAAATTAGGAAGAGTGTAACTTTTTGAACATAGCTAACCGTACTGTAAATTGATGTCCCGGTTCAACTCCCTCGAAAACAACTCATACCCCCTTTAGCCCACAATGAATATGGTTAATATCAGCTTTTATTAAACGGACAGCCTCGATTAACGAGCGCATGTAAAAGAGCAGAAGAGAATGACATTTACTAATTGCCCTTCTTAGTATTATAAAGAACAGAAAGAGGTTATTTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAACATGTGTAAAAATGGTGAAATGTTGTCTGTATGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTAGGGGGATTTCGCT # Right flank : CACGCTGCTGCCGTAGCAAATGAACTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCAGCAACCAGCGATGGTTATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAGATCGACACCAAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //