Array 1 1339839-1337886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134317.1 Streptococcus equi subsp. zooepidemicus strain NCTC6180 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 1339838 26 80.8 39 ..TTTC.T.................. AAGACTGTATCTTAACCAATAATACGATTGATTGTCTCG 1339773 26 80.8 41 ..TTTC.T.................. AAGGAATGTTACCTCAGCAACACCATCAATTCTTGGTCTCG 1339706 26 80.8 41 ..TTTC.T.................. ACTAATAATAACGATTGGCTCTGGCATTGGTTTAGGTCTCG 1339639 26 80.8 42 ..TTTC.T.................. CATAAAAATCAAGAAGTAATATCAACTAACCAATCAGTCTCG 1339571 26 80.8 41 ..TTTC.T.................. GTCTTACCATTAAATTTTTCCTTGCATCACACTGTGTCTCG 1339504 26 80.8 40 ..TTTC.T.................. TGTTCAAAAGTTTAGTATAATTTTTCGTTTTATTGTCTCG 1339438 26 80.8 40 ..TTTC.T.................. TCATACCCAACAAGTGGAGAAGACACTACTTGCCGTCTCG 1339372 26 80.8 39 ..TTTC.T.................. TAGGGTTACCAAACTCTAATCCCAAAAAAGTAAGTCTCG 1339307 26 80.8 40 ..TTTC.T.................. TTCGTTTAACAAATCTAAATCCCAAGTTGCAATCGTCTCG 1339241 26 80.8 40 ..TTTC.T.................. AATGAATTTTTGATAACCTCAACATCCTTTCCCCGTCTCG 1339175 26 80.8 41 ..TTTC.T.................. TGTATTTGACACATCAAACACAGGAACAAGACGAAGTCTCG 1339108 26 80.8 42 ..TTTC.T.................. AAGGGTCTGCCGTTATACAAGACAGGGCGACTGAAAGTCTCG 1339040 26 80.8 39 ..TTTC.T.................. CATCATTTTTAAAAGCTCCAATTAAAAACTTTTGTCTCG 1338975 26 80.8 39 ..TTTC.T.................. AGGTTGATTAGATATTTCTGTCGTAGCTCCACGGTCTCG 1338910 26 80.8 39 ..TTTC.T.................. ACAGCACAACAAAGCACCAAGCTTTTTTAGGAGGTCTCG 1338845 26 100.0 40 .......................... ATAATTATAGTTTTGATAACATTTGCATGATTCTGTCTCG 1338779 26 100.0 42 .......................... TATTGAATTTTAAAATAATTTAAAAAAAGATGAACCGTCTCG 1338711 26 100.0 41 .......................... TGTGTATTCCATGTTATTTCCCCCACTTACGCTTGGTCTCG 1338644 26 100.0 41 .......................... GATATCAAAAAACTCAAGTAATCGTTCTTGGCTTGGTCTCG 1338577 26 100.0 41 .......................... AGAAAGATATTAAAACAGCCTACTGGGCGGATAAAGTCTCG 1338510 26 100.0 40 .......................... ATAATTATAGTTTTGATAACATTTGCATGATTCTGTCTCG 1338444 26 100.0 42 .......................... TATTGAATTTTAAAATAATTTAAAAAAAGATGAACCGTCTCG 1338376 26 100.0 41 .......................... TGTGTATTCCATGTTATTTCCCCCACTTACGCTTGGTCTCG 1338309 26 100.0 39 .......................... CGTTTTTACGTCGCCCTTGCTTAAGCCAGCCCCGTCTCG 1338244 26 100.0 42 .......................... CCTTGCGGGAGCTTCTTTGGCCTCGTTAAACACTCGGTCTCG 1338176 26 100.0 40 .......................... AGGAGACTGTGGCAGGGGTTGTGACAGGCCTAAAGTCTCG 1338110 26 100.0 39 .......................... AGTTAGGTCAATATCAACATCAATCGTACCAACGTCTCG 1338045 26 100.0 41 .......................... TCTAGCTGTTTTTGCAAGTTGTTTAATCGAAGAATGTCTCG 1337978 26 100.0 41 .......................... TCTTGATAGTAGTAATTATCAATATGCAGGAACAAGTCTCG 1337911 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 30 26 90.4 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGACTGGTTGATGATGGTATTGGTTACTTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGACTACGTCAGGTAGCAAAGTTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGTGCTTGATACCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTAAGATTCGGTAGAGCCTCGTTTATTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGGAGTCATTGGTACAGG # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //