Array 1 10781-12332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRO010000061.1 [Clostridium] symbiosum strain SL.1.18 GHLIHBCF_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10781 32 100.0 34 ................................ TTTTTTACCCACTTCTGCACAGCGGCTCCATTTG 10847 32 100.0 34 ................................ CTTATACATTGTTTGGTAAATCATATCTACCCAC 10913 32 100.0 34 ................................ TTGTTAACCGTATCGGGCGTGTGCTTATCACGTC 10979 32 100.0 34 ................................ AGGAAGAGCTGAAGGTGAGTGAATGGGCAGAACG 11045 32 100.0 33 ................................ TTTATATTTGTCCGGAATGCGGATGCGAAATTT 11110 32 100.0 34 ................................ GGTTCTTCGGGCCTTCAAGCGGAACGTTATCGGG 11176 32 100.0 33 ................................ CTAACGCGGAACTTGTTGAGTTAAAAACGTTAT 11241 32 100.0 34 ................................ TTGTATTTTTCGGAATTACTACGGGAGACGCCCT 11307 32 100.0 34 ................................ AATGAGTGGTATAATAAATACATAAACAAGAGGT 11373 32 100.0 33 ................................ CTTTTCCCGGACAAAAATCGTAAACCGGATGAA 11438 32 100.0 34 ................................ GTTGAGTGGGGTGGGATAGATGAAGTCTTGCAAG 11504 32 100.0 34 ................................ GGATTTAGGTTTGTGATTGACTGGTTAAACGAGA 11570 32 100.0 35 ................................ ATACTGGCCAGAAATAGAACTTCCATCCGCGTGAT 11637 32 100.0 33 ................................ ACCGGCGATAATAGCCTGTTTATCAGCTTCTGT 11702 32 100.0 36 ................................ TTTGAAGCACTGAGTAAATATGAAAATAATAAGGAG 11770 32 100.0 34 ................................ ACTAAACATTTAAACTTCTATCGGGTAGTCGTAT 11836 32 100.0 35 ................................ GCCGGGGCCTATGGCTGGGAAACACGCCGCAGTAT 11903 32 100.0 34 ................................ ATCCAACACCCGGTAGCGTTCTGCCCATTCACTC 11969 32 100.0 35 ................................ CAAAGTATCTTTTAACGGCCGCATGCTGCCATCTG 12036 32 100.0 34 ................................ AGCTTCTTCGTCATCGTCAAATTCAATATGTGCT 12102 32 100.0 33 ................................ ATATGCAATATGATTTGAACCACAATCCAAACA 12167 32 100.0 36 ................................ TATTAACGGGCAATGCCGCAGGGCACGCATCCGGTA 12235 32 100.0 35 ................................ CTGAATGCTTTTTTCCAGGCCATACCCACGGCCTT 12302 31 90.6 0 ..........................-...GT | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.6 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : GCTATAATAAAGTTGTAACAGTAGTGGCTAATAAGATATACTAAGAATAATCAGGAAAGAGGTCTTTATTATGCCACAAAATTACACACCCGAGTTTAAAAAGAAGATTGTTCGCCTTCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81429-79409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRO010000025.1 [Clostridium] symbiosum strain SL.1.18 GHLIHBCF_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 81428 32 100.0 34 ................................ TTCACCGCATATAGGGCATTTAGTAAGTAATAAT 81362 32 100.0 35 ................................ ATGTTACATACTTTCAAGAGCCTATCGTGACCCGG 81295 32 100.0 34 ................................ GCAAATTATGAAACTGGCCGAAATACGCCGATGG 81229 32 100.0 33 ................................ AACAACTTTTACAGAACATTCGTTCGTCTCCCT 81164 32 100.0 36 ................................ AGAAGCCCTGACAAAATATCTGAAAGATGGGGAAAA 81096 32 100.0 35 ................................ TTCGTTGGATGCAGAATAAGCATAAAATCCATAGC 81029 32 100.0 32 ................................ AATCTGATACCGGGACCCCATTGTATCGCTTG 80965 32 100.0 34 ................................ CCAGCATTCCTTACAGGTTTTTCCTGCACATTTT 80899 32 100.0 35 ................................ CATTTTCTTCTACAATCTTTATCCGATCCAAGCCT 80832 32 100.0 35 ................................ CTTCACTTTTCCCAGTAAATGTAGACTGCCTGGTG 80765 32 100.0 33 ................................ TCATTGGCAAAATAGGTGAATTAGTACAGATAA 80700 32 96.9 36 .....A.......................... CGTCCCATCCACCACGCCGGGCATAGCGACGGTCAC 80632 32 100.0 36 ................................ ACGGGCCTTTATTTTTACAGTATCTTCCGGCTTCAA 80564 32 100.0 34 ................................ ATCCACAAAATATCTCTTCTTCCTTCCGTGTAGC 80498 32 100.0 32 ................................ GATATAACAGATGCAATAAACCCAAATACCGG 80434 32 96.9 34 ............G................... TTATCTGCCTTGTCGCAATGTTCACATGGTTTAT 80368 32 100.0 34 ................................ TGATACGGCCGCAATTGGCTATCAGACAACTATC 80302 32 100.0 33 ................................ ATCCCAGACTGCTTTTAAGCCATCCCAGAGTTT 80237 32 100.0 34 ................................ TATTGGGCCGAATGCTCCCATGACTTGAACATTT 80171 32 100.0 33 ................................ AGTTCAGCCAGTTTACTTCATCCGCCGGAAACG 80106 32 100.0 33 ................................ CACTAAATCTTCAGTATCTGTTGATAAACCATA 80041 32 100.0 34 ................................ CTTTAAATAAACCGTATAAATTCCATTTAGCGGC 79975 32 100.0 34 ................................ AGTCTCAACTGGCCATTCGTATAAGACTTCATGC 79909 32 100.0 36 ................................ TTAAAAACGCATTCCGCTAAGGAATGTTGGGCGGTA 79841 32 100.0 35 ................................ AATGCGGGTATCCGGTCGCAACCCCGGAGGAAGTC 79774 32 100.0 34 ................................ GGGGTTACAGAAAAATTTCTACAGGAAGCTATTG 79708 32 100.0 37 ................................ CCTTACCGGATCGAGGTAAAAGAGTATCACAGCAGCC 79639 32 96.9 33 ......A......................... ACGAACAGTATCAGTCGGCTTCACCTTTGCAAG 79574 32 100.0 35 ................................ AAACCGGATGCCGTTGGTTTTTAGATGCTGTTTTA 79507 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 79440 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.3 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GACCGCACAGCTTTAACGGATATCGTCCCCCCTGTCAGGCAAGAACCGCAGCATAACCAGAGTATAAGCTCGCGAAGAAGCAGATATTTTCTAGCCACAAGTGTTACAAAAAAGCTTGACCACAACAGGATCGAAACCCTTCTACTTACAAATCCCGGTTCTTTCAACA # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33516-33881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRO010000038.1 [Clostridium] symbiosum strain SL.1.18 GHLIHBCF_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 33516 33 100.0 33 ................................. CACACACAACACTGTGTAACAATACGCCGGCAT 33582 33 100.0 33 ................................. CATATCGTGGGTCGTAGCTTTGATAAGTGCTTC 33648 33 100.0 34 ................................. GGCTGGCAGGAATGGATGAGCAAAGCATCCGATA 33715 33 100.0 34 ................................. GGCTGGCAGGAATGGATGGACAAAGCATCCGATA 33782 33 100.0 34 ................................. AAAATACCGTTGGAATCGAAGACAACCCTACTGC 33849 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATTGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTTGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 34629-35599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRO010000038.1 [Clostridium] symbiosum strain SL.1.18 GHLIHBCF_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34629 33 100.0 34 ................................. ATAGATGTTTCCAATGACTTTCGCATAATCTTCC 34696 33 100.0 35 ................................. CTTTTACCTTGTATGTACAAGGTTTTTGCCCTGAA 34764 33 100.0 35 ................................. CATCCGGATGACTGTATCAGCCAAAAACGGATATT 34832 33 100.0 33 ................................. AAAACTGGATATGACCCGGTGTTACAGTCAATC 34898 33 100.0 34 ................................. GCCACAGCAGGAGTAACGAAAGTAAGCATTGAGG 34965 33 100.0 35 ................................. TTTCCAGTACCAAACATACCAACGTAAATACGCAA 35033 33 100.0 34 ................................. CACACCGAGGTGCTGACATATGGCGCGTATCAGT 35100 33 97.0 34 .C............................... TACTTCTCCAAGATCATCATAATAAGGATTTTTG 35167 33 100.0 34 ................................. ATACACTTCCGCGCCAGATATATCGTGTTTTCCG 35234 33 100.0 33 ................................. TGATTGCTCCACCATCTCCACACGATTTTGAAA 35300 33 100.0 35 ................................. CGATACGTGAAGGCGAAGCTCCACATTGGGGCGTA 35368 33 100.0 33 ................................. CCGCCACATTGACCGTTTGACTAAACGGAGCAG 35434 33 100.0 33 ................................. CTTGAAGTTATGCAGGGCAAGTGGGAGGGCGTA 35500 33 100.0 34 ................................. AAAGAGGTTAACGCCTGCTCGTGTACCTTCTGCT 35567 33 84.8 0 ......T.......T.........A...T..G. | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTAATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGCTGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAGATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //