Array 1 66989-68212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJK010000006.1 Streptococcus agalactiae strain 659 NODE_6_length_112391_cov_19.6303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66989 36 100.0 30 .................................... CATGCCTTTGAAAATAAATTCCGAGCCATT 67055 36 100.0 30 .................................... ACTTCATTGATGTTTTGTTCAAATTTCTCA 67121 36 100.0 30 .................................... CAAATTATAGCTAAGTACCCAAACAGTATT 67187 36 100.0 30 .................................... AAAGTCATCTTTATTGACTGTTTTTCCTTC 67253 36 100.0 30 .................................... TTACAAAAAGTTTTTAGATTACACGCAAGA 67319 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 67385 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 67451 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 67517 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 67583 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 67649 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 67715 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 67781 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 67847 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 67913 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 67979 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 68045 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 68111 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 68177 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //