Array 1 14240-13878 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJDK01000109.1 Bacillus thuringiensis strain 4D5 NODE_109_length_14272_cov_44.048256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =========================================== ================== 14239 39 100.0 41 ....................................... GGTTGTTCTTCCTCTTACCTATTTTCCTTTACTGACATCCT 14159 39 94.9 40 ........T..................T........... TGCTGCTCTTTCTTTTCCCTATTTCTTCTTCTTACATTTC 14080 39 100.0 41 ....................................... GGTTGCTTTTTTTCTTACCTCTTTCTCCTTACTTACATTCT 14000 39 84.6 43 ........T...T..G.....TA.T.............. CGTTTGCTCTTTCTCTTACCTATTTCTAATCAACTTGCAACAC C [13974] 13917 39 82.1 0 G......GTA.T......C..T................. | T [13890] ========== ====== ====== ====== ======================================= =========================================== ================== 5 39 92.3 42 TTTTGCGCCTTGCTTTCCTTAACTCTTCAACTTGCAACA # Left flank : CTTTCTTTTCCCTATTTCTTCTTCTTACATTT # Right flank : GTATAATTTATTTCTCAACTAAGTAATTCTAAAAAAAATCATGTCATTTTAAAGTTTTCAAGCTATTTTTCTCATATTTTTTATAAGTTACATACATAATATGCAACATGTTTGCGGTATCCTTTCCCTAACTTTTCTATCATCTTCACCATAAACCTTTATATACCAAGGGTTTAGGTGCTTTTCCATTTACTTTTATACATATCATCCAACTTGCAACACGTTTGCGGTATGCATGCCCTTATTTTTCTCACAAGATGCAACAGTGTTTGCGGTATCCTTTCCCTACTTTCATTCTATAAATGTCAACAAGTCCTTTTATATCAAGGGTAATTATTACAATTCATTTTTAATCATTACGTTCACTAACTTGCAACATGTTTGCGGTATCCTTTCCCTAACTCCCCTACCATTTTCACTATAATCCTTTATATACCAAGGGTTTAGGTGCTTTTTCACTTACTTTTATACATATCACACAACTTGCAACACGTTTGCGG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTGCGCCTTGCTTTCCTTAACTCTTCAACTTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 22993-23679 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJDK01000027.1 Bacillus thuringiensis strain 4D5 NODE_27_length_66274_cov_83.207003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22993 32 100.0 34 ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 23059 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 23125 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 23192 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 23256 32 87.5 33 .........T.A.......T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 23321 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 23386 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 23452 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 23517 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 23583 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 23648 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.6 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30653-31079 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJDK01000027.1 Bacillus thuringiensis strain 4D5 NODE_27_length_66274_cov_83.207003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 30653 32 84.4 35 ....T....CT.G.....A............. CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 30720 31 93.8 34 ...........-G................... ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA C [30729] 30786 32 100.0 35 ................................ ATAATTGAATATGAGCTGCCGCCGATGGAAGGGAC 30853 32 93.8 33 ...................T..A......... ATGGAAATGGAACGTTCTTACGGATCAAAAGAA 30918 32 96.9 33 ..............G................. ATGTAGCTGGTATTAATGCTTTGTGAAAAACAA 30983 32 96.9 33 ....................A........... TAAATTACTTGCTGCCTTATCTAGATTACTTTC 31048 32 68.8 0 ......T..CT.G......TA....G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 7 32 90.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAGGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : CTGATAAGATAATTGATAGTAATTTAGTGTTTTTGTTGGAGTAAGGGGACCTACTTCAATTCATACGGCAACTAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATG # Questionable array : NO Score: 6.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //