Array 1 55267-54688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLT01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55266 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55205 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55144 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55083 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55022 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54961 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54900 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54839 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54778 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54717 29 93.1 0 A...........T................ | A [54690] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGCCATGTTTGATTGTGCGGATTGACCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57439-55580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLT01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57438 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 57377 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 57316 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57255 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57194 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57133 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57072 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57011 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 56950 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 56889 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 56828 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 56767 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 56706 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 56645 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56584 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56523 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56462 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56401 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56340 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56279 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56218 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56157 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56096 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56035 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 55974 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 55913 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55852 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55791 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55730 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55669 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGCCGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 76050-73946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLT01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76049 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 75988 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 75927 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 75866 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 75805 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 75744 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 75683 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 75622 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75561 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75500 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75439 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 75378 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 75317 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 75256 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 75195 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 75134 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75073 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 75012 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 74951 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74890 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74829 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74768 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74706 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74645 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74584 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74523 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74462 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 74400 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 74339 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 74278 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 74217 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 74156 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 74095 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 74034 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 73973 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //