Array 1 97771-101380 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018722.1 Thiomicrorhabdus aquaedulcis strain HaS4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 97771 32 100.0 36 ................................ TAAAACATAAACAAACATTGCGAAACTATCATTTTC 97839 32 100.0 33 ................................ GTCCTGAGTGGCAATACCTGGCCGCTCATACGA 97904 32 100.0 33 ................................ TAATAACAACGGCAAACCAACATAAGCACCGCC 97969 32 100.0 34 ................................ TCGTGATGATTCTAGTGCGTTTTGAATTACCGCA 98035 32 100.0 33 ................................ GCGGCAAGTGCTTTGAGTTAAGCGTTGTACTCT 98100 32 100.0 34 ................................ CCACCTTACGGTTTTATCAACAATGATACTGGCT 98166 32 100.0 33 ................................ AAACCAAAGCTACACTTTCCGCCTGCGCGTTAG 98231 32 100.0 35 ................................ GACCTACCCCAACACGTCGCACAAGTAGCCAAAGA 98298 32 100.0 34 ................................ AATAGTACGGGCGAATTTGGCCACATTTGCGGAA 98364 32 100.0 33 ................................ CCAAAATAGGCTTTTACCGGTACCCTGCGGACC 98429 32 100.0 35 ................................ ATAAAGTCCTAGGTTTTTGTAGTTGTCGCCGCCCA 98496 32 100.0 34 ................................ AAATGGAATCAACTATCGCTACAGTAGCTATTGA 98562 32 100.0 34 ................................ TCCGCCTCCTCCGGTTGAGAAGACAAACCAAGAG 98628 32 100.0 35 ................................ AACAGCGTACTTTGTTTCAAGCGAACGGCTATCCT 98695 32 100.0 34 ................................ CATGTACCCGGCCATTAGGCATGGCTGGTATGTA 98761 32 100.0 34 ................................ GAGCATTTGGTCGTATGGAATAGAAGTCGTTGCC 98827 32 100.0 35 ................................ CCACAAAACCCACTGTGTGCTTAAACGCTTGGGTG 98894 32 100.0 33 ................................ TAAGGCCTGCTGGGTCTGCTGAACTTGGCTGGT 98959 32 100.0 35 ................................ TGACCCATGACGTCTTTGTCGTCTGGGGTTAAATC 99026 32 100.0 34 ................................ GGTGCCATTGGTCGCCGCCGCGCTGTAAGGCGCG 99092 32 100.0 34 ................................ TAGCTTACTGGTCTTTTTAGCCATTGCGCCAAAG 99158 32 100.0 35 ................................ AATTTCGTATGCCAACCCGTTTGGGGCAAAGAATA 99225 32 100.0 35 ................................ ACAGCACGATTGGCTAAGACTTCATCAATCTGATA 99292 32 100.0 35 ................................ TTGCGTATGGCACGAGAGCCTCGGTTGCTATGTGC 99359 32 100.0 34 ................................ TTAAAGTCGCTTCCATCTTTTAGAACAGATTCAG 99425 32 100.0 34 ................................ TACCACGGGCGGCTGGGGCGTTAATCCATTCACT 99491 32 100.0 36 ................................ GGTGATAAGGCGTTTTATTTTTGGGTTAAACGTGTC 99559 32 100.0 34 ................................ AGCGCCCATGGTGCTGTTTACTAATAACAGCACG 99625 32 100.0 34 ................................ TTCAAACTCTTTAGAGCGCATACCGCGCGCTAAG 99691 32 100.0 34 ................................ TAGATTTTTATCAATTTGCTTTTTCATGGCGTTA 99757 32 100.0 34 ................................ TACCAGCGGCCTACCCATGCCGCTTATGCCTTTT 99823 32 100.0 34 ................................ TATGACGAAGTCGTTATAGGGTCGGACCCCAACC 99889 32 100.0 35 ................................ ATTGAGAATAACGCGAGGAGCACCTATGAGCTTTC 99956 32 100.0 35 ................................ AAACGTTACACCCAATAACAGCAGCAGGGTATTGC 100023 32 100.0 34 ................................ TTATGATTATTACGCCAAGTGTGAAGAAAGTCGA 100089 32 100.0 33 ................................ TAGGGAATGAGGAAGGGTAGGGGATCGTATTCA 100154 32 100.0 34 ................................ TCCGCATCGACAATGCATGGGTTGTCGTATCTAC 100220 32 100.0 40 ................................ AACGTCAGGGGTGAGGTTAATTGGCTCATACGGCAACCTT 100292 32 100.0 33 ................................ AACGTCGCGGCCGCGTCGGCCTACCACGTTTTG 100357 32 100.0 34 ................................ CATTATAAGTTTTTACGGTTAAAAAAACGCCGTA 100423 32 100.0 34 ................................ TTAGAATCCTGTTCAGATGTTTTTAAAGAAAAGC 100489 32 100.0 33 ................................ AATAGTAGCCTAAAGGCAACTATAAGGCAACAA 100554 32 100.0 35 ................................ CGCTCCAACCTCCAACCGCTTGCAAAAGAGGCCAT 100621 32 100.0 34 ................................ CAAATGTAAACGTCACGGCCAACAATTGCGTCAA 100687 32 100.0 35 ................................ TAGCACGACCGGTTGGTGCTCGTTTGATAAAAACA 100754 32 100.0 34 ................................ ACGTTGATTATTAGTTGCGGCTTGTACTTGTCGG 100820 32 100.0 34 ................................ ACATGGTTAACATGATTGAGCGCGTAGGCGGTAT 100886 32 100.0 35 ................................ ATCTTTGTGCAGCCTTTGGCCACGCTCAACGGCTT 100953 32 100.0 33 ................................ TCAAGACTAGTCACCCATTGAAAACCTTTTAAA 101018 32 100.0 34 ................................ CAACCCAAACCTTTATTTAGTGGCGTTCTATGCA 101084 32 100.0 34 ................................ GCCATCGTTATTACACCATTTAAAGGAAATAGGA 101150 32 100.0 36 ................................ ATGCCTTAAATCGTGAAATCTTAACCCCTCAATCCC 101218 32 100.0 34 ................................ TAAACTCCAACGTGTGCAGCCGGCCACAGTCCGG 101284 32 100.0 33 ................................ CTATTTCTTTATCTATGCCTTTGGATCAACCGC 101349 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 55 32 100.0 34 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : GACAACGTCAAAAGGAGATTGAACATGCAAATGATGACATTAGATGAATTAAAAAGTGAATTAATGCAACAACCTGATTTTAAAAAGGAATATGACGCGCTTGAAGAAGAGTTTAAGTTGATTGAAGTCTTGGTTGATATGCGCCAAAAAGCAGGTCTAACCCAAGAAGAAATTGCGCAAAAAATTGGCACTAAAAAAGTAATATTAGCAGGTTAGAGTCCGGCACGGGTAACCCAGGCTGGAAGACCCTACAAAAATACGCTCACGCCTGCGGGTTTAAAATTCAATTGCAGTACTCTTAATTTAACCTGCCTTTTTAGCTCGCGCTAACCCCTGGTGCTCTTTAAAAACCCGGAACCTTAGCGATAAGCCAAAACAGCCTAAAATTGGCAATTATTGATTCTTAAAATATTAATTTTGTTAAAATACAAACGCCTATTTTTAAGGTTAGCGAATTCCCGTCTACAGCCTAACGATTTACTAGCCTTAAAACATAAGCA # Right flank : CTCGCGGAAAGGTGTCCAGCGGGTCGAAATATCGTACTGGACTGGCTACAATCCTTCGTACACAAAGACACGTTAAAATGTGACTTAAAAAATACGAATAGGAATTGAACATGAAACATCAAAAACGCTATGACGACCAACTCAAACAGCAAGCCATTGAAATGGCGCTAGAAGGTTCAAAATCCGTGGCACAAATCGCCCGAGATTTAGACATAAAAGACAACACTCTTTACGGTTGGGTTGATAAACATCGTCGTGATAATCCTGATAAAGCTTCAACTAAACTGGTTGTCGCAATACCAGTCGATTTAGAGGCACAGAACCGCAAACTCAAACGCGAACTCGCTCGTGCATTGGAGGACGTTGAACTCCTAAAAAAGGCGGCGGCGTACTTTGCGGTTCACAAGTAGCAAAGTACGCCTGGATAGACGAACATAAAGCCCACTATGGAGTGTGCCGACTGTGCCGATTAATGGATCTCAAACGCAGTAGTTACACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.70,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 102733-103817 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018722.1 Thiomicrorhabdus aquaedulcis strain HaS4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 102733 32 100.0 34 ................................ TCAGATAACAAGGAAAAAGTACAAGCACTAGGCG 102799 32 100.0 33 ................................ TTCCTGCTGCACCAAATACCACCCCACTACCGT 102864 32 100.0 35 ................................ TAGCCATGGATTTACACGGCTTCCAAGGGCGTTGA 102931 32 100.0 33 ................................ TAAACATGTTCGTGATATGTATATACAGGCTGG 102996 32 100.0 34 ................................ GTGCCGAAGCGGTTAAAACGGATTACAAAAAACA 103062 32 100.0 33 ................................ ATGAGTTTAGGACTAATTACATTTACGAGTTAG 103127 32 100.0 34 ................................ TCGCGATCGGTCAATCGGCCGTCCTGTAATGCCT 103193 32 96.9 33 .............T.................. TGCTTATGCTGCTGTTATTGATCCAGTTGTAAT 103258 32 100.0 34 ................................ AGCGTAGCCATACGGTACGGTTTGATGCAGTGCG 103324 32 100.0 34 ................................ TCGAAAGGATTCGTGCATCATTACCCTGTCGGTG 103390 32 100.0 33 ................................ TGAAACTCACGCACGCAAAGTATGCGCATCTTT 103455 32 100.0 33 ................................ ATTTGAGTTCGCCTTTATAAAATACGTGACTAT 103520 32 100.0 35 ................................ AGGCTGTCTGCTAGGGTCACAAAATACGATTTCGC 103587 32 100.0 34 ................................ ATCATAAGTTTTGCCAACATATTCAGCAGGTTTA 103653 32 100.0 34 ................................ CAAGTAAATGCTGTGTGCGGGACCCTGTAGCTTT 103719 32 100.0 35 ................................ AAACTTGCGTGATTGACTCGCTTGATTGGCTTGAG 103786 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.8 34 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : GAAGGCTGGCAATATCTAGCCGTGTTTATCGATCTTTATTCACGCCGAGTGGTTGGCTGGGCTATGGATAAACACATGAGTGCCCAACTGGTGAAAACCGCTTTAATGAGAGCGTTGTGGAGCCGAAAGCCCAAGCGCGGGTTGATTATTCATACGGATCAAGGCAGTCAGTTTGTCTCCAAGGCCTATCGTAACGTGCTCAAACACTGGGGCATAAAACCCAGCATGAGCCGTCGCGGAAACTGTTGGGATAATGCGGTGGTAGAGAGTTTTTTTGCTTCTTTGAAAAAGGAACGAGTGTATCGGACAACCTACAGCACGGGTAAAGAAGCATTATACGATGTGACCGAATATATTGGTTGGTACAACCACAAAAGAATGCACAGTACCAATGACGATTACTCGCCAGTAGAGTATGAAAATCAATGGATCAAAGCCATGAAGGACTTAGATAAAAAATGGGCGTCTTTGTGTACGAAAAAGGGTTGACAGTCCAGACA # Right flank : CTGCTCTCTGAAAATGGCCGCCTACCATTACCCGCATCGGGCGCGGGTTTAAATTTTTGTTTGATTATTGACCAGGCCTGGTCATAACTTTATAAGCCATAAAAACCATAAAATTCATAAGGCTAATTTGGACTTTGATTTAATGATTTGATATTAAGCATATAACCCATGCACCAACGTTAATTTAAAGTTCGTGTATTACTTAACAACGCTGGGTTATAAAACTTCTTTAATAACGTTTACTTAGGATAAATAAATTTTGTGCTGGCTTTTCAATAATTGGGGGTGATCAAGTTACGAATTATCTTGATAAGCGTCAAGTTTCGCATTAGTATCAGTAAAAAATCATAACCTTAATAAGAGTGCTGTAAATGAGAAAAAATCACCCAATTCTTCAAGAAGAGTACGCTGTTCCTAAAGGGCTTACTTTGGTTTCTAATACCGATTTAAACGGCACAATCACCGATTTAAACGATGCCTTTGAAATTGTAAGTGGTTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.70,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //