Array 1 868658-863961 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020334.1 Xanthomonas oryzae pv. oryzae strain XM9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 868657 31 100.0 34 ............................... ATCGACATACCTGCATTCCAGGCTTTTATTTTGC 868592 31 100.0 35 ............................... GCGTGAGCAGAGCAACCCAACTAAGGACAAGCGCC 868526 31 100.0 34 ............................... ATCTATCGCCGTCCGTGGCACCCGTAAAATCCTG 868461 31 100.0 35 ............................... TTTGTCTGCGATACTACTACTGGAGCTGTGTTGTA 868395 31 100.0 36 ............................... GATATGTTGGACAACGTTAAGTTTACTGGCAGCAAG 868328 31 100.0 37 ............................... TTGGCGACGTGGAGCACAAGACCAGCAAGAGCGGTAA 868260 31 100.0 34 ............................... CATGATAGCCATGATGGCCACAGCTGCCCCAACT 868195 31 100.0 34 ............................... CTTTGTAGCCGGGAGGAACCCCATGCGGCAGAAG 868130 31 100.0 35 ............................... CTGCACATACTCGATCAGCGCGCTGTCAGTACGGC 868064 31 100.0 35 ............................... TGATCCTTCCAGGCCATGGTAGTGCCAGAAGCGGC 867998 31 100.0 35 ............................... CAGACGTTGCTGTGTCCTCTTCGCCACGATGGCGT 867932 31 100.0 35 ............................... TCTATAGGTGCCTCAGTCGCTAACGTGCAGCTATC 867866 31 100.0 35 ............................... CCAAAGAGCCGCCCAAGCTGTATCGCCAGACGCAC 867800 31 100.0 35 ............................... TTGTCCAACACCTTGCCGTCGATCGCACGCAGATC 867734 31 100.0 34 ............................... AATCAGCGCGCTGTCGGTACGGCCCGAGCCAATC 867669 31 100.0 33 ............................... CCCCGTTGGGTGTATGCAAACAAGATCAAGCTC 867605 31 100.0 35 ............................... AAGACTTTTTGGTACAGGTGCAGGGCGGCCAAAAC 867539 31 100.0 35 ............................... CACTGGCGACTCAAGCACTTGCAGGAGAGCATGCG 867473 31 100.0 34 ............................... GTTTACTTCTGCGATTTTCGCGGTAGGAAGTATG 867408 31 100.0 35 ............................... CTCAAGATTGCAGATTATCCAGCAGAGGTGCGCCA 867342 31 100.0 35 ............................... AAGGGGTCTGCGACGCAGCAGCTCCAAACGCTGTC 867276 31 100.0 35 ............................... AGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGAT 867210 31 100.0 35 ............................... TGTTCTTTACGGTATTTGTAAATTAACTCCTGCAC 867144 31 100.0 34 ............................... AAGGCACAGCAGGAACGCGCGCGCAAGACCGACC 867079 31 100.0 34 ............................... AAATCGATTGCGACCCGTCTAGCATCGTGCCATG 867014 31 100.0 33 ............................... CTCAAGCAACACCCACTGTGCTGCTACTGTGAA 866950 31 100.0 35 ............................... TGGTCTGCTGCTTCTGCCTTAATGGCAGACAGCCT 866884 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 866819 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 866753 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 866687 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 866622 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 866556 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 866490 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 866423 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 866357 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 866290 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 866224 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 866160 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 866095 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 866030 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 865963 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 865897 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 865831 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 865767 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 865701 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 865636 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 865570 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 865505 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 865438 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 865373 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 865306 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 865239 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 865173 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 865106 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 865038 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 864973 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 864908 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 864843 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 864778 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 864712 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 864646 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 864581 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 864516 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 864450 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 864386 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 864319 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 864254 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 864188 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 864123 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 864056 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 863991 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 72 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //