Array 1 295310-296862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHW01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V125 isolate V125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295310 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 295371 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 295432 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 295493 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 295554 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 295615 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 295676 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 295737 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 295798 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 295859 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 295920 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 295981 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 296042 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 296103 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 296164 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 296225 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 296286 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 296347 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 296408 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 296469 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 296530 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 296591 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 296652 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 296713 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 296774 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 296835 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 312995-313634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHW01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V125 isolate V125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312995 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 313056 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 313117 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 313178 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 313239 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 313300 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 313361 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 313422 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 313483 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 313544 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 313605 29 96.6 0 A............................ | A [313631] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //