Array 1 941033-942402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020565.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 941033 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 941094 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 941155 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 941216 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 941277 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 941338 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 941399 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 941460 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 941521 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 941582 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 941643 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 941704 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 941765 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 941826 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 941887 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 941948 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 942009 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 942070 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 942131 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 942192 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 942253 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 942314 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 942375 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 958662-959302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020565.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 958662 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 958724 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 958785 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 958846 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 958907 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 958968 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 959029 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 959090 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 959151 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 959212 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 959273 29 96.6 0 ............T................ | A [959300] ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //