Array 1 163396-160865 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNY01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016017 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163395 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163334 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163273 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163212 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163151 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163090 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163029 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162968 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162907 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162846 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162785 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162724 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162663 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162602 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162541 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162480 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162419 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162358 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162297 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162236 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162175 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162114 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162053 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161992 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161931 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161870 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161809 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161748 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161687 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161626 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161565 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161504 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161443 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161382 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161321 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161260 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161199 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161138 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161077 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161016 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160955 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160894 29 93.1 0 A...........T................ | A [160867] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182129-179903 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNY01000028.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016017 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182128 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182067 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182006 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181945 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181884 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181823 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181762 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181701 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181640 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181579 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181518 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181457 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181396 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181335 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181274 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181213 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181152 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181091 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181030 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180969 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180908 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180847 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180786 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180725 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180663 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180602 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180541 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180480 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180419 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180357 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180296 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180235 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180174 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180113 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180052 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179991 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179930 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //