Array 1 395006-396193 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMJ01000002.1 Escherichia coli strain 10432wC9 NODE_2_length_469307_cov_29.04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 395006 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 395067 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 395128 29 100.0 32 ............................. GCTTGCGAATGTGTGCCGTAGAACGTGCGTCG 395189 29 100.0 32 ............................. ATTTCGCGCTCTCTGTATCGAATGTCACGAAA 395250 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 395311 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 395372 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 395433 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 395494 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 395555 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 395616 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 395677 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 395738 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 395799 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 395860 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 395921 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 395982 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 396043 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 396104 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 396165 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATCATTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 421833-422471 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMJ01000002.1 Escherichia coli strain 10432wC9 NODE_2_length_469307_cov_29.04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421833 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 421894 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 421955 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 422016 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 422077 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 422138 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 422199 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 422260 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 422321 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 422382 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 422443 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //