Array 1 39152-35913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVDQ01000016.1 Lacticaseibacillus paracasei strain 525_LPAR 733_147944_2118298_60_,...,197+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39151 36 100.0 30 .................................... TGAATTTTTAACATTGGATTACCGATCACT 39085 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 39019 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 38953 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 38887 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 38821 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 38755 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 38689 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 38623 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 38557 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 38491 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 38425 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 38359 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 38293 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 38227 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 38161 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 38095 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 38029 36 100.0 30 .................................... GGTTGACGCGCTGAAACAATCATGTTATAC 37963 36 100.0 30 .................................... TGTTCAAAATGATGATGGCTAATGCTGACT 37897 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 37831 36 100.0 30 .................................... CTGCCGGCGTGTATCGTTTGTAGAGTTCGG 37765 36 100.0 30 .................................... AAAGAGAAGCGTTCGCGAGATTTTGGTAAC 37699 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 37633 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 37567 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 37501 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 37435 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 37369 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 37303 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 37237 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 37171 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 37105 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 37039 36 100.0 30 .................................... AAGGACGGGCAGAGTTAGGAAAGAAGCCAT 36973 36 100.0 30 .................................... CAGACGAGCTCGGGATCAGCTACAATGCCT 36907 36 100.0 30 .................................... ACGGGGGTGTACATGCCGACTCTGATGCTA 36841 36 100.0 30 .................................... GTGGATCTTGCCGCGAAGTACCCGCGTTCG 36775 36 97.2 30 .............A...................... CGCACACGACAAAGAAACCTCCTAGGATAA 36709 36 100.0 30 .................................... GAATATCAGGCAACGTGATCGTGCCTTTCT 36643 36 100.0 30 .................................... TCTTCCATCCTTGGCAGCTTGGCCGCTATC 36577 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 36511 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 36445 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 36379 36 100.0 30 .................................... ATAAAAACAATGGCGATTATCAAACTTGAT 36313 36 100.0 30 .................................... AGATGGCCGTTGTAAATGACGACATCACAG 36247 36 100.0 30 .................................... CAGAATACTACATTGGCGAGCGTGAGGACG 36181 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 36115 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 36049 36 97.2 0 ...................C................ - Deletion [36014] 36013 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 35948 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 50 36 98.9 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //