Array 1 26853-27980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000001.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26853 29 100.0 32 ............................. CGCCGCCACGCGATCACCGCGACCGACCTCGC 26914 29 100.0 32 ............................. TGATCGCGGAGCTGTATGAGCGGGCCGAGGGC 26975 29 100.0 32 ............................. ATCCACAGCCAGCGCGTCCGGAATCGCCATCT 27036 29 100.0 32 ............................. AAGGTGACCGGCAAGCTCCGCTGCGTCAGCGA 27097 29 100.0 32 ............................. CGAGGTCCAACAGATCCTCGACACGGCATACG 27158 29 100.0 32 ............................. GCCACCATCAGCCGCCAGGTGCCCGTCGTCGC 27219 29 100.0 32 ............................. AACAGAGTCACCAGCTTTAGGAGTCGAGGACA 27280 29 100.0 32 ............................. ACCTGAGCGCCAACAGCCGGATAGTAACTGAA 27341 29 96.6 32 ............................T CGCGCCTTAAGGTGACGCAGATCCATTAGCGG 27402 29 100.0 32 ............................. CATATTGCGACGACTGTCCTGACCGGGAAGTC 27463 29 100.0 32 ............................. CTCGCCGCCATCTCCGGCTCCAATTCGCAGCA 27524 29 100.0 32 ............................. AGCGGGGCGAGCAGCGGACCGGGCGACACTTC 27585 29 96.6 32 ............................T TCCCTGAACGATCCGGTCGAATTCGTCGGGCT 27646 29 100.0 32 ............................. ACATCAGGTCACGGCCGGCCAGGTCCCGCTGC 27707 29 100.0 32 ............................. GAGCGCTGCACCTGCGGAGGCGGGAGCGGGGG 27768 29 96.6 32 ..............C.............. CCCACCCAGACAAGACCGCCGGCCACGGGAGA 27829 29 96.6 32 ..............C.............. TGCGTCCAGGACATCCCCGTCTCCAGAGCCAG 27890 29 100.0 32 ............................. TTGTATGCGGCGGCCTTGACCTTCATGCGTGT 27951 29 93.1 0 ..............C...........T.. | T [27977] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 CTGCTCCCCGCACCTGCGGGGATGGCCCC # Left flank : GACGGGGAGATTCCCGGCGTGGCCGGTGAAGTAGGCATCGAGCCCGAGGGTTTCCAGCTGTCCGTCCTCCCCGCGGGAGAGCGGGGCGTGGAGGTCGGGCTGAGGTTCGACAAAGCGGTGGCGGAGTCCGAGACCGTCGAGTACACCCCTCTCGGGCCGGCGACTCTCCGCATGGAGCAGGTGCGTTCGGTCGAACTGCCGACTCCCGGGACGAACCTCGATCCGCTGTGGAAGAGGGTTCTGCACGGTGAGGAACGGGACGAAGTTCTCCGGATGCTGTGGGACGAGGAGAAGGACGTCCTTCATGTGCGGGACGCCGGTACACAGCTGTCCTGTCGTGGGGGTGTGTGGCGATGGGACCTGACGTAGTAGCCGCCGCTTGCAGAAGTTCCGCCCCCACGCCTGTTTGCCGGATGTGTAGCCTCTCGCGTCTTTTGCCGGAATCGGTGAAACTGGTGAAAACCGCGCCCCCTGCGCCGTAGACTCGCAGGTCACGCAGT # Right flank : CGGTGTCCTCCTTGACGCATTCGATCTGGAACTACTCCCCGTGTCCGTGCGGTCAGGGAGTCATGTGTTCGATGGTGTGGCAGGTTTCGGCTGCTGTGTCCTGTGGGGATTCGGGCGGCTTTGGTGGGGCAGGGTGTGCGGGGCGTCGGCGGGGCTGGAGTTGTTGGGGGTGTAGGCCTCCAGGCGGTGGTCGGGGCTGTCGGGCTGGAGCCAGGCCTGGTAGGTGACGCTCGTGGCGCCGACCGTCGGGTGCTGCAGGCGCATGGTGAGTTCACCGGTCGGTCCCGCCAGGCGCGCATCGGTGCGTGAGCGGCTGCTTTCGCACCGGCTGCTTTCACACGGGGCGGGCCGTGACGGCACCCTCAGACGTGGGTCGGCGGAGCAGATCATCTGTCAGCGGTCGACTGTTGCGGGGTGCGCGTTGGTGACACACGCCAATGCCGCTGAAACCAAGGTGCCTCGACGGGCATCGGTCGGGTACTGTGCGGACCATGTCGAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53737-52368 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000014.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53736 29 100.0 32 ............................. CACAGGGTGACCACCGAGAAGCGCGGAAAGGC 53675 29 96.6 33 ............................A CCGCGGGGATGGCACGTGCCCACCGGTGCGAGT 53613 29 96.6 32 ............................A GCCCCGCCGGACCCCCGGCGGGGCTTTGACGT 53552 29 100.0 32 ............................. AGACGAGTGTCCACACCTCTCTCTGTTCCCTC 53491 29 100.0 32 ............................. CAGCAAGAATGGTTCCGGTAATCGGAAACTCC 53430 29 100.0 32 ............................. TCTTCCGCACGTCGCCGATCTTCCTTCGGCAT 53369 29 96.6 32 ............................T CCGCACGTACTCGTAGGTCACCTCGAGCTCGT 53308 29 96.6 29 ............................G CCCATACTCGCCGTGATCNTCGAGCTCGT 53250 29 100.0 32 ............................. TTCAGCGCGGGACGCGTACAGCGTGAAGGTGT 53189 29 96.6 32 ............................G CCCATACTCGCCGTGATCATCTGTGTCGGGTT 53128 29 100.0 32 ............................. GCGAAGACGGTCCCGCAGGTGATCAGGAAGAC 53067 29 100.0 32 ............................. GCGCAGCGTGCTGCTCAAATGCCCCCCGGTCC 53006 29 100.0 32 ............................. GACCCGCACTGTGGAGATCACGGACGGGGCGA 52945 29 100.0 33 ............................. CCGCACGATCGCCACGGACTGCGGGCTCCCCCA 52883 29 100.0 32 ............................. CCATCCACTCACCAACCAGGAGGAATCATGGG 52822 29 100.0 32 ............................. CCGGCGAGGAAGCTGGAGCGTTTCGCGCAGTC 52761 29 100.0 32 ............................. ACGTCCTCCCAGGTGCCGTAGCTGTCGGCGAT 52700 29 100.0 32 ............................. GTGCCCGGCTCCCCGCACGGGGCGGCCATGTC 52639 29 100.0 32 ............................. TCCCGCGCCACCGCCCTGAAAACCGCGGGCGG 52578 29 100.0 32 ............................. GAGGCGGTGAACCTCGAGCTGACCGGCTCGAC 52517 29 100.0 32 ............................. TTCCCGACTCCCGATCTTGTCTCCGCCGCTGC 52456 29 100.0 30 ............................. CACCCGGTGGTCAACGACATGGTCACGGAG 52397 28 89.7 0 ..-........................TG | C,G [52371,52392] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GATATCGTGCACCCCGGCGAGCCACACGGCGAGAGCACGCGCATCCGCCTCACCGCCCGGCAGCACCTCAGCGACCAGCTTCCGCACCCCCGTGGGAAGCCACTGGTCCCACAGCAGGCCGGCCACTGCAGCGCTGTCCTCCATATGTCGCCACAGCGGCAGCCACCCATCGGTGCCACGGTCATGTTTGGCCCATACGGCCCGAGCCGGCCCGCCGAGCCTGTGCAGCAGGCTGCTGCAAGCCCCTCCCCCACTGGTCATGCGAGCAGGTATACACAGGGCGGGCGCTCTTTCACACCAGATCTTCGAAAAAGGGCGGTTTCCGCAAACCATTCCCGCAGATCGCACCCAAAGAGCATGCTGGTCGCGTAGAATTTACGGCTCGCTCCAGAGCAATTGACGACCACTCACACCATAAGCCCCCAATGCCCTATTTGCCGTTTTCAGCGAAACTCTCCAAAACCGCAACCATGGAGGAGTAAAACCCCAGCTCAGCCAGC # Right flank : AAGCCAACAGCACCAAAAGCACGGCGAAATGGCGGCAAAGTACGGAAGCAGCATGAACGTCAGGAGCAGCCGTACCCGGTACCGTCCCAGCCGCTGCGCGGCGGATGAGGCCGCCCGGCTACACGCCCCGCCAGAGGTTGGCGAATGCCGCGTCCTCGATGGCGCGGCGCTGGCGTACCGCCTCCAGTTCCATCACCGCGTCGTGGACGGCGGCGAGGACGGTGAGGGTCGCGTCGTCGGTGATGCCCGGTTCCGTGGTGGCCGGTTCGTCGAGGATGCCGACGGCCGCCGCCAGGGTGAGGAGCACCGGTTCGTCGGCCGCCCAGCGGCAGGCGGCGCGGCGTCGGGCCGGGGTGTCGGCGAGGACCGGGCGGCCGCCGCGGACGGGCAGCCAGCGGCCGCGTTCCCAGGTGAGCCGGCCCTCCTGTTCCAGGGCGGTCAGGTAGGCCGAGGTCAGGCCGTTGCCGCGTCGCCAGAGCCAGTCCTGGAGGGTTTCGTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63456-64275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000014.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63456 29 100.0 32 ............................. TGGATACCGTGGATCCACCGCCACTTACCGAT 63517 29 100.0 32 ............................. CTTAACCACGAACATGCCGAAAAGCCCTTTCA 63578 29 100.0 32 ............................. ACGATCAGGTACACGGGTGCGAGCGGTATCCA 63639 29 100.0 32 ............................. GGCGGCATCGACCCGCAGATCAGCGCCCAGAT 63700 29 100.0 32 ............................. GTCGAACGGCCACCCTCGAGCGCGCGGGCCGA 63761 29 100.0 32 ............................. AACTGGGCCCACGGCAAATCGCAGCCGCGGCC 63822 29 100.0 32 ............................. CCGGCGGCCACCGTGACGCCCGTCGAGTCGGA 63883 29 100.0 32 ............................. GAGCGACGGGCGGATCATCGGCAAGAGGGGGA 63944 29 100.0 32 ............................. CTGTTCGGGTCTGGCTCCGTTGCCAAGGCACA 64005 29 96.6 32 ..................A.......... AACCCCAGTCGGGAGCGCGCGGAGCGGCAGCT 64066 29 100.0 32 ............................. TCGTGGGACGGGTACAACGTGCCCCCGGACGG 64127 29 100.0 32 ............................. GGCCGGCCCGGCAGAGGCCGGGCTGATCCCTC 64188 29 100.0 32 ............................. CATGTGCTCCCCGGCCCTGGCCTGGCGTACGT 64249 27 89.7 0 .....................-.-....T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CATCAACCACGATGGACCCGATGACTACTACGAGGACGTGAGCTGGTGACGGTCATCGTCCTGACCAACTGCCCGGCCGGACTCCGGGGATTCCTCACGCGCTGGTTGCTGGAGATCTCGGCGGGCGTGTTCGTGGGCAACCCATCGGCCCGAATCCGCGACGTGCTCTGGGCGGAGGTCCAGCAGTACGCAGGCCAGGGCCGTGCCCTTCTGGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCATGCCTGGCACCCGATCGACCACGAGGGCATGACCCTGATCCACCGCCCCAACCCCAACGCACAGGCCCCTGCGGCAACTTCCCGCAACGAACCACCATCCGGCTGGAGCAGGGCCTCCAAACGCCGCCGCTTCGGCAGGAGGCGATAGTCACAGTGTCCCTTCCGCCTTGTTTGCCGGAATCAAAGAAAGTGGTTCAAAACTGCGTGTGCCCTTAGAAAACCCGCAGCTCACACAGC # Right flank : TATCCACGAGCTGGTGCGTGAGCTGAACCGAGGCTGCCCTGTCGCCTTCTTCGTGGCCCCGGGCTCGGGGCTCCCGGTCCGGGCCGGCCGAGCAGCCCCGCCCCGCCCGGCGCAGGCTCGTCGACGGGCGGGGCGGCGGGGGCGCTCCTATGCTGAGGGCGCGGGCCGGCCGTCTGTGCGCAGCCGGTCACGTCGGTGTCCGGCGTGTGTCCGCCGGAGGTCCACCGGGCCCCGGGCCCGTCGGGGGCCGGCGGCCCTTCGCCGGAACTTGCCGGAATCCGCCGGCATCAGCCGGACGTCCGGCGGGAACACGAGGACACCGCAGCTCGTCCCGCGTCCGTCGGCGACGGCCGCGGGCACCGTTCTCACGCGTCTGGAGGCGGCCCATGACGCAGGTGTGTTCTCGACTGTGCCGGGGTGTCGTCGTCACGACCGCCGTAGGGATGCTCGCGGCACCGTTCGGTGCGGGGACCGCCTCGGCCGCGCCCCCGTCCGTGACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 117692-118083 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000014.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 117692 36 100.0 34 .................................... AAGCGTGTTCGAGAGGCTCTTCAATCGGTGCTCG 117762 36 100.0 38 .................................... GGAGAAGAAAGCACTCACCGAGACTCTTGGGAAGTGCA 117836 36 100.0 33 .................................... ATGTCATCCTGAACCGATGCACCCGAGCCACGT 117905 36 100.0 35 .................................... CAGGCGAAGGGACTGGCCACGGCCAAGAAGAAGTA 117976 36 100.0 36 .................................... CCGTACTACGAGCACGGCAAACAGATCGGCTATACG 118048 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 35 GTTTCTATGCCCTGCGGGCGTCAGTTTCGGTGGAAC # Left flank : GTCCCCGACCTCGAGGACTACCGGCTCCACCGGGGCGGCCCGGGCGAACCGATGTTCCTCGACGAGCAGGTCACGCTCCTGGAGGGCACCCGGGTCGCGGCGATGGCGGGCGAGCACCGGGTGACCGTACGCTCGGGCCACCACCAGGCGGTCGACCAACCCGGCGAAGGGCTGGTGGTCGCGGCCCGCGCCGACGACGGGACGGTCGAAGGAGTCGAACACCCGGAGAAGTGGATCGTCGGCGTCCAATGGCATCCGGAGGACCCCGACGGCTCCGCCGAGCACCGCACCCGCCTCTTCACCTCCTTCCTCACCGCCTGCCGCCCGAACTGACACCCTCCGCCCCGACGTACATCAAACGGCCACCGGCTGATCTCCTTCGAGCCTTCGGCAACGAGAGGAGCGGCCGGTGGCCGTCCTTGTATTCGGCCCTTGTATTCGGGGTCCGGTATCCGGGTACTCACCTCGGCGCTTGGAGAAACGCCTGTATTCGCGCCCGG # Right flank : CCCTTCGTCTGGGGAGGGGCCTGTGGCCTGCAGTGATGATGCCCGGTGCGCGGCGTCGTGTGTCAGCGTACCCGAGTAAGTGTGGCGCGCGTCACTGTCGACGTGGAGTGTGTGGCTGAGCTGCGTAAACGGGCCGCGCGGCAAAGGGCGTTTTCGGGGGTTGCGGGTGTGGTGCGGTTACGGCCGTCTCCAGTGTTGGGGTGAGTGCGTGGCATGGAGGTGCTCCGTCATACGATCCAGAAGTCGGCGCGTTCCTCCAGACGGCGGTTGCCGAGGATGATCAGCTCGTTCAGGGTGGTCGCCGGGAGTGGGTAGAGGCGGATCTGGTCCTCGTCCCGGTCGATCAGCTTGCGTAGGGCACCGCGGAGACGCTGAACCTCTTTCTTCGTCGGCAGAGTGACCTCAAAGACGCTGTACTGGACACGGGCACCGTGAGCGGCCAAGAGGTCGGAGATCTCGCCGCGACGGTCGTTGTCGGCGATGTCGTAGCTGATCAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATGCCCTGCGGGCGTCAGTTTCGGTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 120957-120550 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000014.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 120956 36 100.0 46 .................................... TCGATCGGTCCCATCGCCTTCTGCAGCATACGACGTGTGGGGCACG 120874 36 100.0 35 .................................... TCCTCAGCCACTTAAAGATGAACTTGAAGACCCGC 120803 36 100.0 37 .................................... GCTCCGTGACAACAGCGCCAATGTTTCCGTACCGGAA 120730 36 100.0 37 .................................... AGCTCGGCCGCGCACCATGCGCGAGCACGGTCAAGGA 120657 36 100.0 35 .................................... CGACGCTCGCGTGGAACAGCCAGCTGAGCAGCATG 120586 36 97.2 0 ...................................G | G [120552] ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.5 38 GTTCCGCTGGATACGACGCCCGCAGGGCATAGAAAC # Left flank : CCTGGCAGGACCTCCAGAACGCCCTGCGCATCGACCACTTGAACCTGACCACGACCACCCGCGACTCCGGCTACAACCGCCTCCGCACGGGCTTCACCGGCACCCTCACCCTCCGCCTCTCCCGCACCGCCCCACCCCACACCGCCCACCTGCTCGCGACCTTGGCCCGCTTCGCCCCGTACGCCGGAACGGGCGCGGGCACGACGCATGGATTCGGGGCGACAACCAGCGTGGTGGAGGTACAGCGGGGCCATGCGGCGCGATACGACTCCCCGAGGAGGTCAGCCCCACCATCTGCGCCTCAAGACGAAGACCGCCCCCGTAACCGGACAACGGCCTCCGCCCCCTTCAAGGCCCCTTCTCGCGCGGCTCATCAGAGCAGCTCAACGCCCCAATCGGCATAAAAGTGATGCACGCCACACAGCTTCGGAACCGCTGGCGCATCCCGCCGCGCAACGGACACAATCTCCGCAGGCCACAAGCCCCGCCCAAAGCGAAGG # Right flank : CCGTTGGCTGTGGCATCGGCTTTCTGTCGGTCATTTAATTCACCGGAATTCATGCCCACAAGGAGGCCGAATTGGCCGAGTTGTTGCACCGTGCCGCCTCCGAGGCCGTATTGCTCAATGCGTGGCGGGAGGTGCAGGAGAACGATCTGGAGGACGGCAAGGTCAGCCCACAGGTAGCCGCCTACTCCAACGGGATCCTTGAGCGGTTGGCAGCTCTGAGTCGGGCGCTCCGCGAAGGCACTTGGGAGCCATCTCCCGTGTACGCGATGGAGATCGAGAAGCGATCCGGCGGGAAGCGACTACTGGCGGTGCCGGCCGTGGAGGACCGGATCGTGGAGCGGGCGCTGATGGAAGTGATCGACGACACGATCGACGCCGTGCTGCTGCCGTGGAGCTACGCCTACCGCAAAGGACTGTCCGTGGCGGACGCGCTGCACGATCTCACGCAAGCCCGGGACGACGGCGCACGTTGGGTGGTCCGCGCGGACATCAAGGACTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCTGGATACGACGCCCGCAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 45178-45806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000018.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 45178 36 100.0 40 .................................... CGTTCGATGTATCGCCGGATCGTCATGATCTGGCGTGCGG 45254 36 100.0 39 .................................... GACCCGAAGCAGAGAGCACCTCCCCTCCGGGAAAGAGTC 45329 36 100.0 38 .................................... GTTGCAGCCCTGTCCTCCCGCATCCCTGGACAGGGAGA 45403 36 100.0 36 .................................... ATCTTTCACGAACGCCTTCAGTCGCTCATACGTTGA 45475 36 100.0 39 .................................... GTTGTCCACAACCCCACTGGCCCCGTCGTCAGCTGTGAT 45550 36 100.0 38 .................................... GCTGCAGCCCTGTCCTCCCGCATCCCTGGACAGGGAGA 45624 36 100.0 36 .................................... ATCTTTCACGAACGCCTTCAGTCGCTCATACGTTGA 45696 36 100.0 39 .................................... GTTGTCCACAACCCCACTGGCCCCGTCGTCAGCTGTGAT 45771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 100.0 38 GTTCCTCTGGAGTTAAAGCCCGAAGGGCATAGAAAC # Left flank : CACCGCACCTGTCGACAGTGGTCGTCACCGGTCGCCTCCGAGTAACCTCGGACGGCCCAGAGACGGCCCGAGCGGGGGTATCGCGAACGCCCTCGATGCGAACTGCGGACGGTACGACCGCTGAGGTCCTAACTCTTGCTGTCTTCCGGAAGCCCACCCGATGCCCACGGGCGTTCCCGGCGATGACAGCATCCCGAGGCAGTGAGCTGACCAGTTGCCTGGACGAGACGATGCCGTCGGCTGGGGGCCGGCATCATGGACGCGGTCCGTGTGCTCTGAAGACGATCGGGGTGGTCACAAGTTGGTAGGGCCGCACTTCCCGTAACCGGACTCAGTCCTGAAGCGCCCAGAACGCCGTTTGCCGCGCAAGCCGTCTGTGCAGGTCAAACCCATGATCAACGAGAATGTGATGCACGACACGCAGATCCGGAGCGACTGGCGCTCGCCGTCGCGCATCGGGCATCATCGACGCAGGCCACAGCCCCCTCCAGACGGGAAGG # Right flank : CGCCGAGATGGCGATTTCGACGGACAGGAAAACCGTCGTGGTGGTGACACCGACGTGGGTTCAACCCCCGCCGTCTCCGCTCCGCGAATTGTGAGAACGGCCCCTGACCGAACAACCAGGTCAGGGGCCGTTTTTGTGCCGGGCTACTGTGGCTGCCTGGCATTCTCCGTGGTTTTCCGCTCGATCGGGCACACGTGAGGCACGGCTACCTTCTGATCCCCAGCTTTATGTGGATCGGTTGTAGCCGGTTACCCCGCATTCTCATTCCGCACCGTCCTGCGCCAACGGGCAGTTGGCTGCGGCGAGAGGTCGGATTCGAGACTTTGGGCGGGAGCTGCTCTGACGCGAGTGATCATGGCACATCACGTCGACTCACGGATCTGGCAGGCTTACAAGCCTGCCCATAGTGCCCGATCTGGGCCATGGTCTTCGAAGCTCGCACCAAAGTGGCTCCAGCCCAGACCCCCAGCCCAGAACCGTGAAGTCGACCGGTCTCAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCTGGAGTTAAAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 41800-43474 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000030.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41800 29 100.0 32 ............................. GTCAAGCGGTACGGGACCCAGGGGTCATCCCC 41861 29 100.0 32 ............................. TTCCAGATGCTCCGCGAGTGCAAAATACCTGG 41922 29 100.0 32 ............................. TGCGACACCGCGTTCCGCAGGCTGAGCGGCAG 41983 29 100.0 31 ............................. CCAGGGTCATCGTGCGGCTGCAAAGCCTGAT 42043 29 100.0 32 ............................. CGTTGCCCACCACCAACCCGAAAGCGCTCCTC 42104 29 100.0 32 ............................. TCTCGAACGAGAGTCTCTACGCTCCGTACGCT 42165 29 100.0 32 ............................. GTGTGCTTCCGGAACGTCGAACACGTACACCT 42226 29 100.0 32 ............................. TGTACGACGGGCCGCTGACAACCGGGGCGGGG 42287 29 100.0 32 ............................. CGCCCACGTCCCCGCCAGGAGGCCCGCATGAT 42348 29 100.0 32 ............................. GCTTAGTGTCGACGGGCGCTCGTGTCGGGGGA 42409 29 100.0 32 ............................. GCAGCGGACCGGGTGGCGGAGGGAATCAAGGC 42470 29 100.0 32 ............................. GGCGTCCCAGTCTCCGGCGATCTCCCAGCCAG 42531 29 100.0 32 ............................. CAAACTGCGCTCCGAAAATGGCTCTTGCGATT 42592 29 100.0 32 ............................. GGACTGCCCTGCCTCGAGGACGTGGAGCAGGG 42653 29 100.0 32 ............................. GAGGGTCGGCTGCCGGTGGGGCGGGCGGCGCG 42714 28 96.6 32 .........-................... TGCACGCCTGGTTCAGCAGCGGACACCCCGGC 42774 29 100.0 32 ............................. GGGACGGTTCGAAAGACGGCAGGGCCTGGTGC 42835 29 100.0 32 ............................. GCCGCACCCTGGGCGGCACCCACGACCGCGGT 42896 29 100.0 32 ............................. CTGGCGGGGCATCGAGGACGCCGCCGCTACGC 42957 29 100.0 32 ............................. GACGCCTACCGCGCCGCCTACTACGGGTCGGT 43018 29 100.0 32 ............................. GGCATCCCGGCCATGTACTGGTCCGCGGACTC 43079 29 100.0 32 ............................. TTCCTGACCGGAGCCCATGTCCTGAAGGGCGA 43140 29 100.0 33 ............................. CCCCTTCCGGATCAGCCCCTCGTCCAGCGCCAC 43202 29 100.0 32 ............................. ACCGCCCGGGTGGCCTGGATCTGGTTGCCGTT 43263 29 100.0 32 ............................. AACGGGAGCACCCCGTACCGGCGGGCCTCCCG 43324 29 100.0 32 ............................. GGCTCGCTCAGGGTCGAGGCGGTCGATCGGCT 43385 29 96.6 32 ........................A.... GCATTCTCAACGTTCGTGTAGGTCCCCCATGC 43446 29 89.7 0 .......................AT...G | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 CTGCTCCCCGCACACGCGGGGATGGCCCC # Left flank : CGAGGGCGACTCCCTGCTGCTCCTGCTGGACGCCCAGGGCATCGAGTGCTCCACCGGCTCTGCCTGCACCGCCGGCGTCGCCCAGCCCAGCCACGTCCTGCTCGCCACCGGCGTCGACCCGGACCTCGCCCGCGGCACCCTGCGCTTCTCCCTCGGCCACACCTCCACCCGGGCCGACGTCGAAGCGGTCGCCAAGGCCATCGGCCCCGCCGTGGAACGGGCCCGGGCGGCGGGACTGACGTAGGGACTTCCGCCCGAGCTGCGCGGCGGACGGACAGCAGGGCGGCCGGGGTGGAAAGCCCGATTCGGCGCGGCGTCAACCCTCGGCTGTTGCTGATGGAGAACGACCGGCAGACGCCGACACGAAGGCGCCCCGAGGATCGAACTCTCGATCAGGTCTCCATCACAGGAACCCAAAGGGTGGTGTGCGGCATTTGCCGGATTCGGTGAAACTCGCCAAAACCATGGGCCCCGCACCGTAAACTCGCAGGTCACGCACT # Right flank : GGCCCCGCCGTTTCTCGCAGGGGATAAGGATTCGGCCCGAGGGGAATCACGGCCGAGTGAAAACAACGGGGTACAGGCGGAGTTGGTACCGCAGGTGGGATCGGTTTTGGGATTGGTTTTTGGGTTGGTATCACGCGCGACTGCCCGTCTGGGTACGGGCACTGGTCGTCCTCGCGGCTGGATGGGGCGTCCTTCTCTGCGGTCAGCAGGTCGCCGAAGGGTACAGGGAGACCAGGGTGTACCTCGGTGCGCCGGTCTGCGAGGCCGGGAGTCAGAGGGGGAGCGGGGGCGACGACGAGGCGTGCGTGCGGCGCGAGGCGGGCACGGTGCTCGACCGTCGGAAGGGCGAGCATTGCTCCCACACCTACGACGGGACGAGCGGAGGCAGCACCACGTGTACGCCGTACTACAACGTCAAGGTCCGGTGGCCTGGCCGCACCGCCTGGCTGTCGGTGGATTCGGGGATGTACGACAAGGTCAGGGCGGGCGACCGCGCCGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56175-57727 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000032.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56175 29 100.0 32 ............................. CGCGCGCGGGTTGTGATGTTCGACGACGGCGT 56236 29 100.0 32 ............................. CTCTGGGTGGCCGACGAGCTGCCGTTCACCGG 56297 29 100.0 32 ............................. TCCAGCGCGGCGACGGTGTCGACCAGCAGCGG 56358 29 100.0 32 ............................. TCAAACCAGGGCGCACCTGGGCAGAAGTAGGC 56419 29 100.0 32 ............................. TCATCGGCGGCCTTGTCGGCGGCCTGGGTGGC 56480 29 96.6 32 ............................T GGCGGCGTCGGGGATGGCGGTCATGTGGTGGT 56541 29 100.0 32 ............................. AAGAGACGAGTCTGTTAAGCGCGTTAGCGGGT 56602 29 100.0 32 ............................. TCAGGCCCGCCGTTCGTCATCCGGGCCTGCCA 56663 29 100.0 32 ............................. ATTCTGCGGCAGGGTCATGAAAGCGTGCTGGA 56724 29 100.0 32 ............................. CTACGCCAACGGCCATTGGGTGAACGACAGCA 56785 29 100.0 32 ............................. CATCTCATCATCTGCAATCATTGCAGGGTCAG 56846 29 100.0 32 ............................. TCCCTTACAGATCTTCCGATGCTGCGAGGTGA 56907 29 100.0 32 ............................. GGCTGCCCGTTGTCGTCACGGCTGACGGAGCC 56968 29 100.0 32 ............................. GCCCTTGAACTCCACGCCGTCCGGGTGCGTAA 57029 29 100.0 32 ............................. GGCTCGACCATGCCCGGATGGATCGGCACGGC 57090 29 100.0 32 ............................. AATGCCGGTGTAGGTGGTCCACTCGGCGGTTG 57151 29 100.0 32 ............................. GGCAGGGGCAGCAGCATCAGGGAGATGCTGGC 57212 29 100.0 32 ............................. CCTCTCCGCGGCCTCTCCGGCCGCAAGGCAGA 57273 29 100.0 32 ............................. GGTTCGGGGAGGGCGGCCGGGCGGATGGTTGC 57334 29 100.0 32 ............................. AGCAGCGAGCCCAGATTGCCGAGCCCGGACGT 57395 29 100.0 32 ............................. GTAGGCCGCGCGGATGTCGCCGTACCCGATCG 57456 29 96.6 32 ..............T.............. ATGACGCAGAAGACACCGGCCCAGTTGAGGGC 57517 29 93.1 32 ..........T...T.............. GTCCACCCGTACCGGCCGTGGTCGCTGGGGCA 57578 29 96.6 32 ..............T.............. TCGATGGAACCGTCGGACAGAACGTGAATGGT 57639 29 96.6 32 ........................A.... CGGTGCACCACCGAAGAAGCGAAGCGCGCTGC 57700 28 79.3 0 .............CT..-.A.....T..T | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : CGCATGAACGCCTGCCCCTGAACCCTCCGGGTGCCTCCGGACGCTCCCGGAAGCCGGGGGACGCACCCGCGCCCCCTCCTGGACCCGCGCCCTCCCGTCGCCCGTGCCCGACGGGAGGGCGCACCCACGACCACCCAGGACGATGCCCGGCCCCACCTGCCCGAGACCGCCGGCCGGATCGGCGCTGGAAGCCGCACACCAGGACAGCGGGGCGGATCGCCCGGCCCGGCAGCGACCAGACGCCGTGCGGCGGACGGCAGGGCCTGGCTCCTCCACCGCAGGACGTGCCGGTGCAGGCTTGCCAGGGAGGAGGAGACGTCGGTCTGGTGCGGCGTCAATTCAGAACAAACAGCGGACGGTGGAATGGGGCAACTCTAGGATCAAGCCCTCGGCCAGGCCGTCATGACAGAGAAGCGAGAGGTGCTATGTTCCTTTTGTCGGACTCGATGAAACTGGCGAAAACCATGGGGCCTGCTCCGTAAACCCCCAGGTCACGCAGT # Right flank : GTGCGGGATCCGCAGCCGAAACTGCGGGCTGTGAGGCCTTCAGCGCGGGGGATTACAACGAGCGGGTGGAGCACTGGTCCAACGCAACCGAAATGGTTACCGACGAGCGGTACAACTCCTTCTCAGGGAAACTCGCCGGAGCAGCAACCAATCCGGTTGAGTGGGGCGCCATGGGGGAGTTGAAGCAGGCCAGCCGCTGGAGACCCGGCTTCCGCGTTTTTCGAGCTGTGCATGTGCGCCCCGCGCAGGCCGAAAGAGACAACCTCTCGTCCAAGACGCCCATCGGAAGTCTCGAGACCGCTGCCTAAGGGCTGTCCCGTAAATGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40540-38620 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000043.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40539 29 100.0 32 ............................. CCTCACCCGTAACGGGGTCTGGGATCTCGAGA 40478 29 100.0 32 ............................. CTCTGCTTCCTCATCTCGCGCCTGAGGTCTTC 40417 29 100.0 32 ............................. CACAGTTGACGGTGGACAGCGATGCGCCAAGG 40356 29 100.0 32 ............................. GCTGATAAAGGAATACGACTGGGGTGCCCACC 40295 29 100.0 32 ............................. GACGCGGAAAATCCGCGCTTCCAGCCTCCCGC 40234 29 100.0 32 ............................. ACTCCCGGCACTTGCCGTGCGTTCCCTCGGGG 40173 29 96.6 32 ............................T GCGTGGGTGACGGGATTTTCCTGGTCAAAGCA 40112 29 100.0 32 ............................. TGGAGCACGCCACTTTCGATCTCTTCGCGCAG 40051 29 100.0 32 ............................. AGCAGCACCGGCGGGACGACGTGCAGCACGAT 39990 29 100.0 32 ............................. AGACGTCATGGCTCATGGCAGAACTGCAGGAG 39929 29 100.0 32 ............................. GACCGGCGGTTGACGGCGACGGAGAACTTCGC 39868 29 100.0 32 ............................. CTCGAAAACCTCGCGGTCAATGCGAACGGGAG 39807 29 100.0 32 ............................. TGCCGCCGATACGGCGACGCAGCCTCCGCCAG 39746 29 100.0 32 ............................. GTGTGGTTGGCCGTACCGACCAACCGGACTTG 39685 29 100.0 32 ............................. GCGCAAGCAGGAACTGAGCGGAGCGCTGTCAG 39624 29 100.0 32 ............................. CCGAGGGCGACGACCTGATGTACAACCCGGAC 39563 29 100.0 32 ............................. AAGTTCGTCTGCACCAGCGTCAGCGCAAGCCG 39502 29 100.0 32 ............................. TCCCTGATGTTTCCCAGCTCCTGGGAGAAGCG 39441 29 100.0 32 ............................. CGCGAAAACCTCGCGGTCAATGCGAACGGGAG 39380 29 100.0 32 ............................. TGCCGCCGATACGGCGACGCAGCCTCCGCCAG 39319 29 100.0 32 ............................. GTGTGGTTGGCCGTACCGACCAACCGGACTTG 39258 29 100.0 32 ............................. GCGCAAGCAGGAACTGAGCGGAGCGCTGTCAG 39197 29 100.0 32 ............................. CCGAGGGCGACGACCTGATGTACAACCCGGCG 39136 29 100.0 32 ............................. TCCCTGATGTTTCCCAGCTCCTGGGAGAAGCG 39075 29 100.0 32 ............................. CGTGACTACTTGGCGAACATCGTCCGGCAGCA 39014 29 100.0 32 ............................. TTCTTTGGGAGCTGCAGGAAGAGACGGAGGGA 38953 29 100.0 32 ............................. CAGCGGACAGCCTCAGCGAAATGCCCGCCACG 38892 29 100.0 32 ............................. CCACAAGCAGAATCCGGCCACCCACGGGAACG 38831 29 100.0 32 ............................. GGCTACCGGGTCACGTCCGGCCTCTCAGGTCT 38770 29 100.0 32 ............................. TCGCGGACGATGCGAAGTTCCGCAGGCGTCAT 38709 29 100.0 32 ............................. CCGATCACCATGCTGGGCGTGGTGGCGGTGCT 38648 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCCTCATCCCCGTCGAAGGCTGGTGGGACGTGCGTGAGAGCGGACCTGTGCGGGTGTGGGAGCGGATCGAGCGGGTGCTGTCCGCGTACGACGAGGCGGGCCGACCGGGGCCGGAGACGTTCACGCTGCATGTCCACGACGGCGGACAGCACCTGCGGCACCCGCACCTGCCCGATCTGCCGCTACCGAGGCCCTGACAGGCACACAACTCCAGGCGTCCGGCCAGCCCGGCAACGACCAGGTACCGCGCGGTTGGTAGCAGAGCCTGGTTCAGCCAACGCAGGATCGGTCCTGTGACCTGCCGGGGGGAAGAGACGTCGGCCCGGTGCGAAGCCATTCAGAACAAACAGCAGACGCCGAAACAGAGACGACCCTAGGATCAAGCCTTCGGTCAGGCTTCTACGACAGAGAAGCGAGGGACGCGGTGTCCTTTTTGTCGGACTCGGTGAAAGTGGTGAAAACCATGGGACCTGCGCCGTAAACCCCCAGGTCACGCAGT # Right flank : GGCGCGCGGTTCCATGCGCCCCGCCGATCCGGTTCGGCGGGGCGCAGCCCCATGGAGCCCGTGCTCAGGGGCTGTGGCCGCAGATGCGCGGCCGAAGCCGTACGGCGGCCCCGGGCGGCACCCCGGCCGTGGTCGTACGGCGGTCTCGCGCAGCGTCCCCCAGCAGCCCCGTTGGTCTCAGCGGCCGATGGTGTCCAGTTCGGCCATGTCCTCGTCGGACAGGGCGAGGCCGGCGCCCGCGACGTTCTCGCGCAGGTGGGCGACCGACGAGGTGCCGGGGATGAGGAGGATGTTCGGCGACCGGCGCAGCAGCCAGGCCAGCGCCACCGACAGCGGGGACGCCCCGAGCCTGTGCGCCACCTTCGACAGGGTCTCCGACTGGAGCGGGGAGAAGCCGCCCAGCGGGAAGAAGGGCACGTAGGCGATGCCGTCGGCGGCCAGTTCGTCCACCAGGGCGTCGTCCTCGCGGTGGGCCAGGTTGTACATGTTCTGCACGCACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9712-11167 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000044.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 9712 29 100.0 32 ............................. GTCTTGGGGGGACACGCCCTCTGGGCGGCGAT 9773 29 100.0 32 ............................. AGTTGCAGCGGTGGTTCCGCAACCGGCCCGGA 9834 29 100.0 32 ............................. TTCGCATAGTCGCCATTCAAGCCAGTCTCCAG 9895 29 100.0 32 ............................. TCGACGCCGCCGCATAGAAACCGACCAGAGGA 9956 29 100.0 57 ............................. AGTCCACTGCTCGGCATTATTCAACACGGTCACTNCGCCATTCAAGCCAGTCTCCAG 10042 29 100.0 32 ............................. TCGACGCCGCCGCATAGAAACCGACCAGAGGA 10103 29 100.0 32 ............................. AGTCCACTGCTCGGCATTATTCAACACGGTCA 10164 29 100.0 32 ............................. TTGATCATGCTCCCCCGGCCTGGTCCCCGCCT 10225 29 100.0 32 ............................. CACCGCACGGCCCACCGTGAGTGCCGCCCGAC 10286 29 96.6 32 ............................G TCGTAGACGTCTGCGTAGGAGATGTCGTAAGC 10347 29 100.0 33 ............................. CCCCACGTATACGCTTCGCAGCGGAACGCCGTC 10409 29 100.0 32 ............................. GCAGGCGGAGACGCCGACCGCAACGGCGGCCA 10470 29 100.0 32 ............................. CATATTCTCGGCCACCCGATTGGCCGTGCCCT 10531 29 100.0 32 ............................. GCGGCCTGCCAGACGTTCGGCAGGACGACCTT 10592 29 100.0 32 ............................. GTGAGACCCTGGCCGCCGGACTCGATCACCGA 10653 29 100.0 32 ............................. GAGAACAGTCCATACAGCTATGGAGCGGCCAT 10714 29 100.0 32 ............................. ATCGGTGTCGCCATTGAAAAAGGCGTCCTGAA 10775 29 100.0 32 ............................. GCCTGGAAACCACCCACCCAGTAGATGTTCGG 10836 29 100.0 32 ............................. CGTCGTCCGTACCGTCAATCGAGTGCCACTTG 10897 29 100.0 32 ............................. TCCGTCGGCCGGATTGTCGTCCCGTCCCAGTA 10958 29 100.0 32 ............................. ACGATTTGCCCGGACAGCGGCCGGCCGTCGGG 11019 29 100.0 30 ............................. CCAGCCGAGGCCAGCCACGGCCCGGCTGTG 11078 29 100.0 32 ............................. ACGATCGGCGGCGTGTGGTTTGTGGCGGTTTC 11139 29 89.7 0 ..............T.........A...G | ========== ====== ====== ====== ============================= ========================================================= ================== 24 29 99.4 33 CTGCTCCCCGCACACGCGGGGATGGCCCC # Left flank : CGAACCGGGCGTCGGCGACAAGGACCTGAAGGTCACCGACCACCCGCCGGAGCACATGCACCGCGCGATCGCCGCCGCCCTCGGACTGAGCGAGATCCGGGTCCTCACCGCCACCCAGGACGTGCACTCGGCCGAGCGCGAGCAGTGGGACGACGGCTGCAACGTCCTCGCCGTCGAGCCCGGCGTCGTCATCGCCTACGAACGCAACGCCACCACCAACACCCACCTGCGCAAACAGGGCATCGAGGTCATCGAGATCCCCGGCAGCGAGCTGGGCCGCGGCCGAGGCGGCCCCCGCTGCATGAGCTGCCCGGTCGAACGGGACGCGGTGGGGGGTTACTGACCCGGCCTGGGGCGGGGGTTCGCCGGCGCCGGTGACTCCGCCGTTGTGGGTGACGGGGCGGCGAGGTGCCCGGAGGGGCGATATGTCCCACCTGCCGGATTCGGCGAAACTAGCGAAAACCAAGGCCCCTGCACGATAAAATCGCAGGTCACATAGC # Right flank : GGAGCCAAAGACCGGGCAGCGTCCTCAGTGGCCGGTGCTCGCTCGACTGCTCACGTCACTGCGGTCAATGCCGCGTAGACCACGATGTTGCCCAGGTAGCCGGTGCCCTTGACGTAGTCGCCGCCGCAGGTGATCAACCGCAGTTCGGGTCGGCCGGTGCTGCCGTAGACCTTCTTGCTGGGGAACTTCTCCCTCTCGTAGAGCTCGACGGCGCGGACGGTGAACACCGCTGTCTTCCGGTCCACCCGGCTGATCTCGATGGTGGCGCCCTTGGTCAGGGCGCCGAGGTTGTAGAAGACGCCGGGGGCGCCGGTGGGGGTGTCCACGTGTCCGGCGACGATGGCGGTGCCTGCCGAGCCGGGAGTCGTGCCGTCGCCGTACCAGCCGGCGACGTCGGCCTTGTCGCGGGGCGGAGTCTGGAGCGTTCCCGCCGCATCCAGACCCAGGGGTGTCATCGGGGCGTCCACGCCGATGGCGGCGATCCGGATCCGGACCGGATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 528-101 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000045.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 527 30 100.0 36 .............................. CCGAGCGCGGTGTGTGCCACGCCGTCACCGGGGGGT 461 30 100.0 36 .............................. CTGTACGCCCCGGACGACTCCGGGGTGTGGCGGTGG 395 30 100.0 35 .............................. GCGCTTTCCACCGCCCGCAGAATCGGCAGGTACGG 330 30 100.0 36 .............................. CTCGTTGCATGACGAGGGATGGCAGGGACAGCCGCT 264 30 100.0 38 .............................. TACAGGAGCTGAGCCAGTGGGAAGGCCAGCTGGCGGCA 196 30 90.0 36 .C..A......G.................. ACATCACCGTGGGCAGCGAGCGGATGACCGTGACAG 130 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTCGGTGATCAACCCTGGAGGGATCGAAAC # Left flank : GCGCCTACGATGCGGTACGCGACATGGCTATGCCCCCCGCCGAGTCGAGCCGGTTCATCCTGCGCATGTTGGAGGAAGTGTCGTGCGACCCCTTGCCCTGAAGGCCGTGACCTGGCGCAAGAGCAGCTACAGCAATTCCAATGGTGGCGCGTGCGTAGAGATCTCCAGCGAATTGTTCACCATCGTTCCTGTACGCGACAGCAAGATAGAACACGGCCCTGTGCTCACGTTCGCGGCCGATGGCTGGACCTCGTTCGTGAACGCCATAAAGCGTGGCGAGTTGGGTACCTGACCCGCGTGCGGGGCTATGGCCCCCAGGTCAACTGCATTGGCGCATCGGCGGCTTGTGCGGGGCGGTTTCGCGCTGCGATCGGCAGGAAGACTGGCAGCGAGGGCGATAAAGTGCTCTGACCTGCGCAGTTGCATGACCGACGGGTTGCTGCAGTTTGCTTCGCTGCAAGGGCTGCGGAGACCTGTGTGACCTGCGGCTTTACCCTCGG # Right flank : CACCGCGATGAAGGTGAAAACCCTTCAGCTCGAGCGGAATGACACCGACGTACGGGCAGAGGCGGGCGCGATCCATGCGGAGCTCGCCACGCTAAGGGCTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGTGATCAACCCTGGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9197-8636 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDR01000069.1 Streptomyces sp. F-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================= ================== 9196 26 100.0 40 .......................... CGCGGGCGGCGCGCTGCCTGGTCTGCCGGGCGGTTTGTTC 9130 26 100.0 40 .......................... CGCGGGCGGCGCGCTGCCTGGTCTGCCGGGCGGTTTGTTC 9064 26 100.0 40 .......................... CCTACCAGGCATCGCGCGGCGGCTGGCTGAAGACCCGTTC 8998 26 100.0 38 .......................... CCGTCGGCACGGTCCGGGGGTGTGGTCAACGCTGGTTC 8934 26 100.0 42 .......................... TCGCTCATGTCCCACATCACCGCGTGCTGCCCGTGCCCGTTC 8866 26 100.0 45 .......................... CTCGAGTTCCCGCACGGCTACGTGGTGCGCGTGCCGCTCTCGTTC 8795 26 100.0 42 .......................... CCCGAGATCGTCGCCGACGTCCCGCCCGAGGAGCGCGCGTTT 8727 26 100.0 40 .......................... GAGAACGTCTACGGAGGGTTCGCCGATATCGCTCGTGTTT 8661 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================= ================== 9 26 100.0 41 CGATCCCTCCAGGGTTGATCAACGAC # Left flank : GCATGCCGGTGGGCCCGCACGACGGTGGAGTCGACCGACACCGTCCAGTCGATGTCGTCGTCAGCATCCGCCGCCGCCAGGACCGCGGCCAGGATCCTCTCCCAGGTGCCGTCGACGGCCCATCCGATCAGCCGTTTGTGAGCGGTTTTGTACGAGCCGAGCCCGTCGGGAAGGTCCCGCCAGGGCGAGTTGGTGCGGTACTTCCATGCGATGACCTCGAGAGTGCGGCGATGGTCGGCCCATCGCCGCCCGCGGACCGGATCGGCCGGCATCAGCGGCTCGATCCGGTCCTACATGGCATCGGTGATCACTCATCGGACAGACACACCCGATCAACCGACCAACCATCAAAGAGACACGCTCCAGTCGGCCTCGTTCACCGGGAAGGCTTCGCTCGTACTGAAACCCGCTGTTCCGGTGCCTTGGGGTTCGGGGCGCCAGAAGGCTCAACCGCCAGCTGCCCTGTTTTCCTCGGCGGCTGAACTCCTGCCACGGAGTTC # Right flank : CCGAGGGTAAAGCCGCAGGTCGCAGAGATGGGGCGAGAAGCTCTTGCCGCCCGAGTTGCAGCGGTCCGGCGGTAGTGCATCTCCCCAGGTCAGAGGATGTCCCCAGGGCCTCCGAGCTCGACGCCGAGCGTGTGGGAGTCGATCAGCTCCGGGGATCTCGCGGTGTACGTGACGATGCTGTCGTGGTCGGCGTCGATGACGGTGGTGAGGGCGGCCATGAGGGAACGGTACTGGGCTGCGGAGAGCTGGCCCTGGAAGACGCTGCGCTGGGTCCAGTGAAGGTACTTGCGGCAGGTCTTGAGGACTTTCGGGTTCCGCTCGGCCGCGGTGTCGTAGACGAGGATGACGAACATGGGGGTTCACCACCATGGCCGGAAGGGTTTGTAGGGCTTGCCCTCGAGGCACAGCCGGACGAGTTTGAGCGCTTCCAGGTGGATGAGCTCCTCGTAGGAGACCTTCCGTTTGAGGGAGCGGTGGAAGACGGTGGTGGCGAGTTCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCCCTCCAGGGTTGATCAACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //