Array 1 20293-19425 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAS01000054.1 Psychrobacter sp. 4Bb contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20292 28 100.0 32 ............................ TTGTAATATAATTTACGGAGTTTATTAAATGT 20232 28 100.0 32 ............................ TGACTTGCTTGCTGAGCGTATATGCACGTTAC 20172 28 100.0 32 ............................ AACGTATGCAGAGCCAAAAGGTAAGGCATTAT 20112 28 100.0 32 ............................ TTTACCAACAAGTTTGGATTGCTCAAATAAAG 20052 28 100.0 32 ............................ ACAGAAACGTGCTGAGAATAAGCCGAACGGCG 19992 28 100.0 32 ............................ GACAAAGATAGTTTCTCCAAATGGCTGCTAAG 19932 28 100.0 32 ............................ AATAGTGCGTAACGACGATGAGAGGTTAAAAC 19872 28 100.0 32 ............................ TTATGCGTAAACTTCGTGGTAAAACTCGGTAT 19812 28 100.0 32 ............................ GTACAGCCGTTTGAAGTTGCAAGTGATGCAAG 19752 28 100.0 32 ............................ ATAAGAGCGCCAAACGTGATAAATATTAGCCA 19692 28 100.0 32 ............................ TCTACAATCCGCTTGCCTGTCGCTGTGTCCGT 19632 28 100.0 32 ............................ TTGCGTAGCTCTCGCTCTCGCTTAGTCTCACC 19572 28 100.0 32 ............................ GATGTCGAATAATCGCATATCGGTCACATGGC 19512 28 100.0 32 ............................ ATAGACATACCAAAGACCGACTCGACTAATTC 19452 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 CTTCCTCACCGCATAGGTGACTTAGAAA # Left flank : GCATATAAAGCGCATCAATGAGGTTGGTGACAAAAACAAAGGGCACGTTGTGATCAGACGCTACCGCCATAAAAACGTGCTTAAGCAGGCTGAAGCATTCGCCGAGCACAAAGGCATTACGCTGGAGGCGGCACTGATACACTGCGCCAAACACAAGCAGGATAACAAACCCTATCCGTATATCAACTTAAGGAGCATCAGCAACAATCAACCCTACTCATTATCTATCATTCAAGAAATGGCAGATAACGAAACTCAAGGGACGTTTAACAGCTATGGCATTAACAATGCGGCAGATAAGGTTACTGTGCCCCATTGGTAAGCTACTTATAAGGTAATGACAAATTACCCAAAAATTGGGACAAAAAACCCTTTTTTTGAGCTATTTAAAAACTTGTAATAAAATCAATTATTTACACTAGGTCGAAAAACGGAGGGTAAGATAGGGTGTTTCACTCTCCACGCCTTATTGTAACTGAGTTTTTTCAGGTATAATTCCT # Right flank : CTACCCCTCGACCTAAATTGGGCTGATGGAATCTTCCTCACCGCATAGTTATTACTAGTACCGATAAGTATATAAAACACATAAGAGACTCTCCTAAAGAGTCTCTTTTTAGGTAATATTAAATGTGTTAATTCTAGTAAAAAGTGTATAATATATAGATTGGTTTAACACATATAGAGTTGAGTATATGAAGACTGTCAGAGTTAGAGCAAAAGTAGTTCAAGATGATTCGGGAGTCTATTCAGAAATTCCTGTTCTAATTAGTGACAGTAATGAAATCCTAAAACCATTAATGGACTATGCATTAAAGTTAAAACGAGATGGTAAGAGTCATTCCACAATTAATAATTATATAAAAGCTACTCAGCTTCTAATTGAATATATGACTGCTAATACAAGTGGCTTCGAATCGCCTGAAAACTTATTTGAAATATTTAGTAGCCGCTTGTATATAGGAACTATTAATGAAGAAGGTTTAGACCCATCAGGCTTATATTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCACCGCATAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29-596 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAS01000004.1 Psychrobacter sp. 4Bb contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29 28 71.4 32 TAGATAT.A................... CCGACAACCAGCGTTTTTTGAAAGATTGTGAA 89 28 100.0 32 ............................ GCTATGGGCATGTATATAGGCACTGGCAGAAA 149 28 100.0 32 ............................ GCTCCACCAAACCAACAACCTCATCAGTTGCG 209 28 100.0 32 ............................ TGATAGAAAATCTATGAACTTATCTAACTTAC 269 28 100.0 32 ............................ TGTTAATGCTGGAGCTTCACAAAGTATAGAAT 329 28 100.0 32 ............................ GATAAGAAGCTACGTCTGTACAGGCATGATGG 389 28 96.4 32 T........................... AACGAAGCAGCACGACAGCGCAAACGCGACAT 449 28 100.0 32 ............................ ATTAACCATGCCGCTTTACGTCCTGATGCTCG 509 28 100.0 32 ............................ ACTTAGAGCGACGCAACCAACGAGCATCTGAC 569 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 CTTCCTCACCGCATAGGTGACTTAGAAA # Left flank : TCTTACATATTATTTATATAATTACTACT # Right flank : AAATAGCTGAATGTCGATTTACTCTTTTAATAGCTTCCTCCACACCTGAGTTTAGCGGTCGAAGAGCTGCGATAGAATGTTATTACCAAGCTGCATGATTAGAGCTCCCTAGATTTAATGATATGAATTTATCGGCAGGGGTCATTTTTAATAAGGCACAATATACTACAATTTATTGATTCATAAAGGTGGGAGTTTCCTAAATATCATATGTAAATGAAGCGTTAATACTATTGTAGTGACAGTGTTAAAACTAAAACTTTGTTTTGCAATTTGATGTACCTTTAACTATGATTACTTTCTTACGGAAAGCTAACGATAGGTAACAATATGAAAATAAATAAATTGTATGCCAGTATCTTATTGACAAGCGCCTTAATGCTGACAGGGTGCGGCGGCAATGATGATGATGGTGAATATGTAGTAGGTAGCGGTGATAGTACTGGCCCTATCATCGACAATAAGCTGAGCTACACAGCATTTGACCCGTTCAGTGATGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTCACCGCATAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //