Array 1 5242-4435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHML010000232.1 Serratia marcescens strain A2 Contig_232_48.946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5241 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 5181 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 5121 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 5061 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 5001 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 4941 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 4881 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 4821 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 4761 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 4700 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 4641 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 4581 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 4521 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 4461 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15014-13723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHML010000232.1 Serratia marcescens strain A2 Contig_232_48.946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15013 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 14953 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 14893 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 14833 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 14773 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 14713 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 14653 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 14593 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 14533 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 14473 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 14413 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 14353 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 14293 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 14233 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 14173 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 14113 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 14053 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 13993 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 13933 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 13873 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 13813 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 13753 28 96.4 0 ....................A....... | G,A,A [13726,13730,13732] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //