Array 1 149431-147916 **** Predicted by CRISPRDetect 2.4 *** >NC_000868.1 Pyrococcus abyssi GE5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 149430 30 100.0 37 .............................. TTATATCTTCTTCGGGGAAGGAAAAGCCCATGTATCG 149363 30 100.0 37 .............................. AAAGAGTAGCTTGAGAGTTCTGCTTCCACTAGCAAAA 149296 30 100.0 37 .............................. TTGAGAATAGTTGAAAAGCTCCACACGGAGCTTGTTG 149229 30 100.0 37 .............................. CCTCTTTTTAGCGTTAATGCTGCAAGGATTGCTGCAA 149162 30 100.0 37 .............................. TCTGCAGGGAGCTTAAGAACAAACGCCGATGAAGTGT 149095 30 100.0 36 .............................. GAAGACCACACTGGAGTAGGTCTCTTGAAGAGTTCT 149029 30 100.0 45 .............................. AGGGCTTGGAGCTGAGAGCCACAAGCCCTCAACCCTCTCTTTCAA 148954 30 100.0 36 .............................. TAAACCGTGCTCTCAATACGCATCCCCCCTAAAAAA 148888 30 100.0 37 .............................. CTTAAACACGGCTATTAGTATCCTCGTCTCGTTGAGT 148821 30 100.0 37 .............................. AATGATGCTGTGTGCTTCGAGCTTAACGTGGAACGTC 148754 30 100.0 37 .............................. GATGAGGAAGGCCGGGGTCGAGCAGTGGGCAATAAAC 148687 30 100.0 37 .............................. TATGACGATGCGGTCTGGGTATATCTCGAGGACTACC 148620 30 100.0 37 .............................. TAATCCTCTATTTCTCTTATGCTCATTCTTTCAAGTT 148553 30 100.0 37 .............................. GGGGCTCCGCCGGGCTACCCCAGCCGCCCGGGCCCGT 148486 30 100.0 37 .............................. GCAACTTATCTCTTATTTGAGCCGGATCGGTAACCGG 148419 30 100.0 37 .............................. CGGCCCTGAGTCGAGGGATTTTTCGCTTTTCTAACCC 148352 30 100.0 37 .............................. CTGCATGCTCGTATAGAACATGGAGAATAAACTTAGG 148285 30 100.0 37 .............................. GAGTTTAAGCCTCATTGGAAGAAACCGATCAGGAAAA 148218 30 100.0 40 .............................. CGGTTCTGAAGCCATAGACGGCTATTCCGGCCCTACTGGA 148148 30 100.0 36 .............................. AGTGTTATAGTGTAGTTTGGGTATGTGCTTCCGAAT 148082 30 100.0 37 .............................. GCAAAAGCGCGAGGTTCTGAACACTGTTCTTCAGAGC A [148068] 148014 30 96.7 39 ...............G.............. CGAGGACGAATGAGCTCGCAACGGCGAGTGCACCAACCG 147945 30 90.0 0 C.....C...........A........... | ========== ====== ====== ====== ============================== ============================================= ================== 23 30 99.4 38 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : GCCACCGCACCACAATTCTTCTTATTATGAAAATTTTTCGGAACCTAGTTAAAATCCGTTATTGCCAATATTCTCCCTCCTAGTCTCCCCAACCTCCAAAATAACTCCTCACGTTGATTATGGCTTGTTTAGTAATTAACTGTTATTAAATTACATGTTGTCACAATTACCCTATAAAAATGTAACGAAATATTTTCGAAATCTCTTAAATTTCATTTTCAACTTGGTATTCTAAATTTGGGAAGTCAACTATTTGTAATTCCCCAGAGTTTATAACGGGTAAGTCCCTATTTTGATATCGAAGCATGTATGTTAGAAAGAGTTGAAATTTAAAGTTTCAAAAATAGGTAGTTACAAGAAATTAATCAAAAAATACAGGCTTCCAGGGGTCTGCCTAAAATTAATTATCGTGAACTTCAATGAACTCCAATACCAGAAAAGCTTATAAAATTGAAGCGACGTAACTCCTTTATAGGGAAAATAAAGCAAAAACGGCCCCT # Right flank : TCGACAGGCCAAAATAAATTGATAAAAAATAAAATTAGGTTTAAAGTGAATACATTTTAAGTTTCTCCCTAACAAGAGGACCAAGCTCTTCTCTCGTCTTATCTGGATAGTGACACGCAACATAGTGATCTTTTTTTATCTCCACAAGCGGAGGTTCTTCGTCCTTGCATTTTTGAGTAACAAATGGGCACCTAACATGGAATCTACATCCAGGAGGAACATTTATCGGGCTTGGAACTTCCCCTGTTAAGATGACTTTCCTAGATGTCCTTTTACTTGGATGCAACGCTGGAGTTGAGAGAAGAAGATAGGCTGTATATGGGTGGTATATCTCCCCTTTCCTAAAATCATCTATGCTGAGTATTTCGACTACCTTTCCTAGGTACATTATCCCTATCCTATCACTCATATACTGGAGAACTGAGATGTCGTGAGAAATGAAGAGGTACGTTAGATTAAATTTCCTCTGAAGGTTTACCAGGAGATTTAGTATCTGGGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 482831-482332 **** Predicted by CRISPRDetect 2.4 *** >NC_000868.1 Pyrococcus abyssi GE5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 482830 29 100.0 44 ............................. TCGATTGAACTGATTGCGTCAATGAACCCATGCACTTTCTCCTG 482757 29 100.0 37 ............................. CTTGCCCAACTTAGCCCTGCCCTTTAACAGATTAGCC 482691 29 96.6 39 .............C............... ACAGATACTAACGGAATTACAAGAGCAGCAGGGTGGTTT 482623 29 100.0 41 ............................. TGTGCCCTGTGATTTTAGCTATGAGTTGGGGAGAAACTCCT 482553 29 100.0 43 ............................. GGGTTCTTCCTGGGGTCAATCCTGTCTAACGTGTAGGCCCTGA 482481 29 100.0 26 ............................. ACCTCCTCTCTCACCCACTCAACCCA Deletion [482427] 482426 29 93.1 37 ..............A.A............ CCGGCGGCGTGGTAATTCAGAGCGACATATTCGTAGT 482360 29 79.3 0 ..............A.A....A.A..TT. | ========== ====== ====== ====== ============================= ============================================ ================== 8 29 96.1 38 GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Left flank : TGTTACGGGTTTTTAGTTTTTGTTTTCTCCTGGGGTTTTGGGCATTTTTACTTTACGCTCGACCCTGGGATCAAGAACAAAACCATTGTAGTGGATTATTTCAAATTTAATTGACTCTTAGAGTTTTTCGTTTTCTGTTTACCACAATAGTGGTAATTTTCTGTCAAGTGTATTCATTTGGAATTCAAGGCTTTTCAAGGCTTAATTTTGCAAACGCGGGATTTTCAATCCCTAATTGGATAGTCTAGGAGACTTAATAAGACTTATTTCTCCCAGGATTTTAGTGCCAGGGAATATTTTCCACTCAATTTAATTTCGATCGCTTGAATTTGTGAATGAGGGTTTTTGGATTGATGGTTATCGAGTTAAGGTTCTCTCCTGGGAGTTTCATTCTTGTATTGGATTTATAAATGAAGTGCAGTATTACCGGTTCTCACAAGGGACAAATTATATAAACCCAGAGAACGCTTTAATAGTGAAATAAAGGAAAAATCCCAAGG # Right flank : CTTGATGTTAGGTTCGGAAGGAGAACCAGCGAAATCGATGAGGAAGGCAGAGTTCCCATAGAAGTTAACATAGCAACAGATTACTAAGGGTATTCTCCCAATTCAGGCGCTAAAGAGGTATTCTACACTACAATCTCTAACGCCCAGGAAAGTTTTTGAGTAGTGCTAAAAGAACTACAGCTGGGGATCAGCATGTTCGGTAAACTCAAAGAGAAGCTAAGATCATTCATAAAAAAAGTAGAGGAAAACGTTGAGAAAGAAGAGAAAGAAGCCGAGAAGAAAGGAATCCTAGAAAAGATACTCATGGTCGAGATAAAAGAGAAAGACGTGGAAGAGGCCCTTGAGGATCTCGAGCTTGAACTACTGGAGGCAGATGTAGCGTTGGAAGTTGTCGATGCGTTAAAGGAAAAGATAAAGGAGAAGCTGGTTGGGAAGAAAGTTAGAATCGGAACGGACAAGGAGAAGATAATTGAAGATGCCGTTAGGGAGGCAATACTCGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1090356-1090059 **** Predicted by CRISPRDetect 2.4 *** >NC_000868.1 Pyrococcus abyssi GE5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================ ================== 1090355 30 96.7 108 .............................G GCGTTTATTCGCGGGGCGGATCCGAGGAAAGTGGAGCTGAGGAGAGTGTTTACTAGGAGTTGCTGGTGGTGATAATGGAGGAGTTAAGGTTTACAGCCTCTCAACCTG 1090217 30 100.0 37 .............................. AAGCCAAAGAAAAGTTCAATCTGTAGGAAATGCGCGT 1090150 30 93.3 32 ...T.........................G GGGCCCGCCGGCGGGGCGGGGGGGGCGGTTTT 1090088 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================================================================ ================== 4 30 97.5 59 GTTCCAATAAGACTAAAATAGAATTGAAAC # Left flank : ACCTGTGGCCGTTACAATGGTAAAGGAAGGGAAGAGGTACGATGTTTCTCCCCTAGAGGAGGAGTTCTACACTCTAATAAAAGAGAACCTTAAGGACAAGTACGTGATGATAAAGGGGGAGAAACCTCCGGATGACTTTGAGATGGAAGTAATAGTGGCCAAGCCTAAGAGGTTTGAAGTTAAGCCGGGAATTTATCAGATGGCCTGGCATCTAGTTTTCAAGGCTTACGGTGATGACGAGCTGATTAAGGTTGGTTATGTCGTCGGTTTTGGAGAGAAGAATTCGTTAGGCTTTGGGATGGTTAAGGTTGAGAACAATAGAGAAGAAAAGGGAATGGGAGTCCAAGAAAGGATGCTATTTAAGAATGAAGATGGGCTAAAGACAGGACCATGATTACTTTTATCAATAGGAAAAAATTCTAAATTCTTTATTTGACTAAATCTTAGATTTCTTTAATAGAAACTTTTAAAAATTTTCTTGAATATTAGCTAGTTGCCTG # Right flank : GTAACAAACTAATTTGTAATAAAAAAGAAGGCATCAAATTGCCCTCCAGAAGGGGTCTTCCTTTGCCTTGACCTTTGCAATCATCTTCAAAGCCTTGATGTCGGTATCTTCAAGGGTATCTCTCAGATGCTTCAGTAGCGTTATCGCATCATCCCTACTGAGATCGACATAGAGGGTTTCTCCAGGGTGGATATGTCTTCCGACTATGGCACCCTCTATCGCTATAGCCACAGCTTGTCCCTTCTTAGCCTCTTGCAAAAACTCGTCTCTGCTCTTTATTGACCTTATCACGCCAACCTTCTGACCGTTCTGCTTAATTAAAGTCACACCAGGCTTTATCCTTCCCTCAATGACCTCTATCCCCACTATCGCCGGGTTGCTCCTCCTGAAGACGTACCTTTCATCTGGATACAGCCTTATAACCCCAGGGAACGTCACTTTGCTGAGCAGTTCCCTCTTCTTCTTCTCCTCTTCCTCCTTGACCCACTCTTCGTAATCTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-2.99, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 1760062-1761920 **** Predicted by CRISPRDetect 2.4 *** >NC_000868.1 Pyrococcus abyssi GE5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1760062 30 100.0 37 .............................. TCTATCTCGGAAAGCAGTAATCTTGCTAGAGTAGTCT 1760129 30 100.0 37 .............................. CTAACACAATTGTCTGAAAGTTACTGTAAATTCCACG 1760196 30 100.0 37 .............................. GCCGAAAGGCCGGCGCTGAGGATCTGTTTCATCGGTT 1760263 30 100.0 46 .............................. CGGGAGTGTTGAGACGGTGAGGATATCACGGGTGGACACTGGGAAT 1760339 30 100.0 37 .............................. GGAACCCCTAGGGGGTCTAAGGCGCCGGGGCCAACGC 1760406 30 100.0 38 .............................. CCCGTCTGATCTACGTAGAATCTGCGTGTTGCCCCTGT 1760474 30 100.0 38 .............................. CGTTGGGCTTCACCTCAACCGGCTTCACGTCTGTTGGA 1760542 30 100.0 38 .............................. ACATTTTTTTGCAAAAATTTTTCAAAAAATCGGCCTAA 1760610 30 100.0 37 .............................. TGAGCCTTCATCAACTTCATCAACTTCATCTTCAAAT 1760677 30 100.0 37 .............................. TAATTGTTACATGGTGATGGCGTCTTGGCGAAATGGA 1760744 30 100.0 36 .............................. CCACTTAAATTCCGCCGAAGCTATTTCGAATATCTT 1760810 30 100.0 37 .............................. GAAATCATTGAGGGACTCGTCGGCCCAGAGGTCGGAA 1760877 30 100.0 37 .............................. TGGCGAGCTTTCCCCTGCCGGCCCTCGCTATGAAGAG 1760944 30 100.0 38 .............................. TCAACTTACGCGCAATACCATCAAGAACACTATTCTCC 1761012 30 100.0 42 .............................. CTATACCGAGTTCATATAAGAGGTTCACTAAGAAAGCAATAA 1761084 30 100.0 36 .............................. TTGCTCCCACATTGAGGAAGTTAGTTGGGAGTGCGA 1761150 30 100.0 37 .............................. TCGATCCGCCCGGGCTGGTATATCTTCGCCGACTTGA 1761217 30 100.0 37 .............................. CCGCAGTAGCCAGCTCTTGTCCGCCGTTGCCCCCTAT 1761284 30 100.0 37 .............................. GCAGTTCCAATTGCGAGTAAAGGCCCTCCGTTTCTTC 1761351 30 100.0 37 .............................. TTTTCTGATATAAACGATGTAGTGTTCGCTTAGGCTT 1761418 30 100.0 37 .............................. ACTGGCTCGATCGAAGGCTTAATCGTTGCAGATGCAT 1761485 30 100.0 40 .............................. CCTCATTCCAGTCCGTTCCCGAGAGGTTCGTCAGGGGCAG 1761555 30 100.0 38 .............................. GAGTTCCCGCTGACCCTCCTCGCCTGCACCAGTAACGT 1761623 30 100.0 37 .............................. GAAAATTAAAAGGCGGTTCATCGGCAACTTTGCACAT 1761690 30 100.0 39 .............................. TGTTGATTTTGAGCTTGAGAATATCAAGGATGCGCTCGG 1761759 30 100.0 36 .............................. CTCATCAAGTATGGAACAAACATACTTGCCTTTGGA 1761825 30 96.7 35 .............................A TAGTGATTTATTTAAGGACGTTTGTAGCTAGCTAA 1761890 30 73.3 0 .....G.C..A.......A....CA...GT | G [1761907] ========== ====== ====== ====== ============================== ============================================== ================== 28 30 98.9 38 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : CATCTGCTCCACCCTTCATTGAAATATTTTCGATACCAATTCACAGCTCGTATTTGTTAATTTTCTCCCCCATAAGGTCTTATCTTAGGTATTTAAGGTTTCTTACTGGATTGGGTATCTTTAGTAATCAATTGTTACTATATCACAATGTGATATAAATATAGCATGTTTTTATGTCGAAAATTTTTCTAAAATTTTGGTTTAACTAGATTATTGGAGTGTACCGAGTATAGTTTCATAGATATTGTTCATTTCAAGATTTGAGCATTAAATAAACACAAGTAGTAAAGTAGAGAGCTGGAAGTTCTTTGCGGATCTCATGGGCATAAATATTCATTGGAATAAGTAAAGCCAAAGACAGGGTTTAGCAACTAAAATGCATCTGAAGTGCCTCTAATTGGGGGATGCATAGAGCTTTATCAAGGCACGTTACCAGAAACCCTTATAAGATCGGAGGATTATATGAACTCAGAAGGAGATATGGAGCAAAAATCGACCCT # Right flank : TAGCGGGCCCGGCGGGATTTGAACCCGCGACCTTCGGCTCCGAAGGCCGACGCCCTCTCCAGACTAGGCCACGGGCCCACAAATTCTTTAAAAATACTGCTGGTAATAAAGCTTGCGGTGATAGTATGCTCCTTCCAGACTGGAAAATAAGGAAAGAGATTTTAATAAAGCCATTCTCAGAGGAATCGCTTCAACCAGCTGGCTACGACTTAAGGGTAGGCAAGGAAGCTTACATTCAGGGAAAGTTCATAGATGTTGAAAAGGAGGGCAAAGTCATAATACCTCCAAAAGAATATGCCCTAATACTGACCCTAGAGAGGATAAAGCTTCCAGATGATATTATGGGAGACATGAAGATAAGGAGCAGTCTAGCTAGGGAAGGTGTTCTAGGCTCCTTTGCATGGGTAGACCCGGGATGGGACGGTAATCTAACCTTGATGCTTTACAATGCATCGGAAAAGGAGGTAATTTTAAGGTACAAAGAGAGGTTTGTCCAGATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //