Array 1 196141-197450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKW01000002.1 Enterococcus moraviensis strain DSM 15919 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 196141 33 100.0 35 ................................. TGGTTGCTCTCGGCAAACTTTAAAAAAGTTATAGA 196209 33 100.0 34 ................................. GGATGCAACAACAGCTGCTGCAGATGCCGCCGCC 196276 33 100.0 35 ................................. CCTAAAACAAGCGTTTCTGCAGAAGTTCCGTCATC 196344 33 100.0 34 ................................. TTGATACTGTTGATAATTGGATTCCGCTATGGAA 196411 33 100.0 35 ................................. TGTAATGTCGCATCGAGTCGCCTCAGATAAGCGAC 196479 33 100.0 34 ................................. ATCTTGATCCTCTTCTGATGGCGTCTCTAACCAA 196546 33 100.0 34 ................................. ACAGTCCATATAAAATCGTGGTCATTTGTAGTGA 196613 33 100.0 34 ................................. CTAAAACACGGTAGAGAATGATATCTTCAATAGA 196680 33 100.0 34 ................................. GTATAATCTATTTGGGCATTCATCAGTTTATTTC 196747 33 100.0 35 ................................. CAATCAGGAAACTAAAATACTCTATTCTGTCGCAT 196815 33 100.0 36 ................................. TCTAAATCAAGCTAACGAAAAAAGACAAGCAAAAAC 196884 33 100.0 33 ................................. GATAGTCCTTTATTATTAGAGTTAGATTTATTT 196950 33 100.0 33 ................................. AGTAATATCAATTGATAGATTACCATTTTTTGA 197016 33 100.0 34 ................................. GAATCAGTTAATAGGCAATTAAAAATGAATAAAA 197083 33 100.0 36 ................................. TGTAAATCAAGCTAACGAAAAAAGACAAGCAAAAAC 197152 33 100.0 33 ................................. GATAGTCCTTTATTATTAGAGTTAGATTTATTT 197218 33 100.0 33 ................................. AGTAATATCAATTGATAGATTACCATTTTTTGA 197284 33 100.0 34 ................................. GAATCAGTTAATAGGCAATTAAAAATGAATAAAA 197351 33 100.0 34 ................................. TGTCCATTCACGAGCTTTGAAATAGGACCATACA 197418 33 93.9 0 ...............T........A........ | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.7 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : ATTACTAAAATTTTTGGATTAGGATAGTAGGTGAGACTAAGTGTTAGTTTTGATTACTTATGATGTAGCAACCAGTTCGGATAATGGAGTCCGTCGTTTGAGAAAAGTAGCAAAGAAGTGTCAAGATTATGGACAGCGAGTTCAGAATTCTGTTTTTGAATGTGTTGTTGATACTACAGAGTTAACTAAGCTAAAAAAAGAGTTGATTGATTTAATTGATGAAGATGTTGATAGTTTGCGTATTTATCGATTAGGAAATAATTATCAAAGTAAGATAGAGCATATTGGAGCGAAAGAAAGTTTTGATGTAGAAGCGCCATTGATATTTTAGAGAAATATTTAGTGCGAACCCCAAGCGCACACTAAATCACTAGGGGATTCGCACCAAACTTTGACTGATTTTTATCAATAATAAGGTGGTTTTCTCATTTGAATTTAATTTTTTGATAAATAGTTTGTGGAATAGTAAAAATATGTTATGTATTTTTATCAAATTCACA # Right flank : TAGTGCGCCGTTTGTATTTTTATAAACTGTTGTTGGTCTACCTCTGCCATTTTATTCCTTTCTCTTCTCAATTGACTCTCTTCAAAAAAATGAAGAATTTTTCATTATGATTTGCTTGACCAAGCGAAAAATAGTAGGTACGCTATGTAAAAAGGCGGTGGACGAATGAATAAAGTAGTCATTTTATTAGTGGAAGATGAAGCGAGTTTAGCTAATTTTATTTCAGAGGAACTTAAATTTGAAGGATATGAAGTGCTTTATGCTCCTGATGGGGAGCGGGCGTTAGAATTATACAAACAAAACCAAGCGACTATTATCCTGATTTTATTGGATTGGATGTTACCCAAATATGATGGTATTACGGTTGCGAGAAGGATTCGCCGTAATAGTCAAGTTCCAATCATTATGATGACTGCTAGAGATCAGTTGGCGGATAAAGTGAGTGGACTGGATGCTGGAACCGATGATTATATCACGAAGCCGTTTGATATAGAGGAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29530-30787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKW01000003.1 Enterococcus moraviensis strain DSM 15919 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 29530 33 100.0 35 ................................. TTTTTATTTATCACATGATGGGTCTATAGAAAATT 29598 33 100.0 37 ................................. CAAAAGAAGTTTTAAGAAATGAAATAGGTTCAATAAA 29668 33 100.0 34 ................................. CTTTTTTAAATAATGAATATTATTATTTGTATAC 29735 33 100.0 34 ................................. CGTGATGTATAAGTATTTAAGTTGTACCTTCTTG 29802 33 100.0 35 ................................. CTCTAAGCCAAAGCCTAGTGAAGTAAACTGAGAAG 29870 33 100.0 35 ................................. TACGTGCCTATAAAATGATGACTCCGACATATTCA 29938 33 100.0 35 ................................. CCCTATCTCGTTTGCTGGAATGTCTAACGCGTTAG 30006 33 100.0 34 ................................. AGGGTTTATCTTTGCCGATAAAGTCCCGCTCAAA 30073 33 100.0 35 ................................. AAGCCTTGCAGATTAAAAACTATGATGGACAGTCT 30141 33 100.0 35 ................................. ACGAAGCGCCTTGCAAGCATCGATAAATCCAGTTT 30209 33 100.0 35 ................................. ATTGTTTTCTACCTCCTGCAGTGCTTGCCATGGTC 30277 33 100.0 34 ................................. TCTTTGTTGTCTACAATCGCAATGTCGACTAAAA 30344 33 100.0 34 ................................. CCATCCTATGATTATGCTAAGGTGAATCGTTTAC 30411 33 100.0 34 ................................. TATGTCAGAAAGCTTTTTAGAATTTGAATCTTAT 30478 33 100.0 37 ................................. TCAATTTGACTTGGTGTAAATTTATAGTCATCCGGGT 30548 33 100.0 34 ................................. TATGTCAGAAAGCTTTTTAGAATTTGAATCTTAT 30615 33 100.0 37 ................................. TCAATTTGACTTGGTGTAAATTTATAGTCATCCGGGT 30685 33 100.0 36 ................................. CTGTTATATTTAAATATGTTATAGTAAGTGGTAAAA 30754 32 78.8 0 ..........A......A.....-TT..TT... | AC [30776] ========== ====== ====== ====== ================================= ===================================== ================== 19 33 98.9 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : CCGTTTTGAATTTCTACAGAAAATGTTGATAAAAGATGATCAGCAACTATCACTTGATTTTGAAGAACCACTGCTAGTTGCAGAAGAAAACCCAGAAATTTTCGAAGATTACTCACAAGTTGTTTGGCAAAAGCGAACCTTAGGAGAAGTAACACATATTTTCAGTCATTTAAAATGGCATATTTTAGTTTTCTACGGGCGTCAAACAGGATTAACAGCTAAGAATGAAAACCAAGCTTGGGCAACAAAAGAAACATTTTCAAACTATGTTTTTCCAAAACCCCAGCAAAAGATGTTAGATCTGTACAAACAAGAATTTAGAAAAAAAGAATAATTTCTTGGTGCGAACCATAAGTGCACATAAAATTATTAGGAGATTCGCACCTGAATTTTGCTGAAAATAGCGGTAGAAATAGACTTTTTCTCATTTTAATTTAATGTTACACTAGTTTTAGTGGTGAAATAGTAGGGATATGACATGTATTCTGAACAATTTCACG # Right flank : TCACCTCAAGTTTAACCTCAAAAAAACTAAAATAATCCTTTATATTTCAAAAGATAATCCTGATTGCTGTGAGAAACCAAACTACTTAGTATGCAAAGCTGAAAATTATGATATAATTATAGTGATATCGGTGTAATGAACACCCAAACGAAGAGCAATCAGCTTTTAGAAGTGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACGATGGTATTAAAAACAAGCGAGTATTCGTTGATTGGTGTCAACGACCATACTTTGGTAACAGAGTCTGATGGTCGTCGATGGGTTACTCGAGAACCAGCTATCGTTTATTTCCATAAGAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTAGCGTCACCTTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 94363-95548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKW01000003.1 Enterococcus moraviensis strain DSM 15919 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 94363 33 100.0 35 ................................. CAAAAGAAGTTTTAAGAAATGAAATAGGTTCAATA 94431 33 100.0 35 ................................. GATATAGATAAAATGACTTTATCAAGCAATATTTT 94499 33 100.0 35 ................................. TTTATTAGGTGCAGATATTTTTAAGGTTATACCGT 94567 33 100.0 36 ................................. CACACTAATAAAGAATCAAATAATCCTGAGGGGTGG 94636 33 100.0 35 ................................. CAATAATGCTACTAGTGGTCACTTTATCTCCTTGC 94704 33 100.0 34 ................................. AAAAATGGCAAGCAAGAAATGGTCGTTGAAAACC 94771 33 100.0 36 ................................. ATTCGTGATGATATTTTCAGGATATACTTTCCCCGC 94840 33 100.0 35 ................................. AGGCGAACCTGGAGTTACTGCAAAAATACGACTTC 94908 33 100.0 32 ................................. GAAATACACTTTAGCTATGATCAATTATTTAC 94973 33 100.0 34 ................................. CGATGGTATTCAATATGTTAAGAACTTAATGAAA 95040 33 100.0 36 ................................. AGATATTTCAACTTGTTGCTTATCAATAAACGCAGC 95109 33 100.0 34 ................................. TAAAATACTTAGATTTTGATCCATTGTTTTTCCT 95176 33 100.0 35 ................................. TGTTAAAGGGCATGCAAACTACGCTCCGCATGGGC 95244 33 100.0 36 ................................. TTTAACCCATCCGAAATTCCCGTTATCCAATTGTTG 95313 33 100.0 34 ................................. AAGGTGATGTTGACATTATAGGGAAACTGACTGT 95380 33 100.0 35 ................................. GGAGCATAATATTTAATTGTACACCTGTGCCTGAT 95448 33 100.0 35 ................................. CGGTTTAACTCTGGCGAACCTGGAGTTACTGCTAA 95516 33 84.8 0 .......................TTT..T.T.. | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 99.2 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : AACGAGAAGAATCTGGCTTTGCAGTGATAATGACGAATGCTGATGCAGGCGAAAAAAAAATGACAATCAGTGCGATTCATGCAGGAAAAGTATTTGTTGATATATTAGGAAATAATGATGCAAGAGTAACGTTGGATGAAACGGGAGGCGGAACATTTCCTGTGAATGGTGGACAAATTTCTGTTTACGTAACGGAAGAAATTGTCGAAAAAGTGAACCGAGACATCAAACGCTCTGTTTTTGAGACAGATTAGGTGAGAAAGTTAAAAAATAAACGTGACTTCTATTAAAAGAATAATTATACTTAGGAGAGTGTTTAAGTGGTATAAACTACGTAAGCTAGGTGCGAACCCTAAGTGCACATAAAAACACTGAGAGACTCGCACCAATTTTTTGGTGAAATATGGAAGAAAATAACGTTTTTCTCATCTAATTCACATTTTTACCGGAAATTATGGTTGAAAAATGACAGATATGTAAACAGTTTGTCACTTTTCACA # Right flank : TACTCAATCCCCAAAAAATCAAAAATACAATGCAAAAAATCTATAATAAAACACTATTACTTGTTTTATCCATCGTCCTTAATATAGGATGATTTGTTTAGCATCATCTGAAAATCAAGCGATTAAAAACAAATGGAAGATAAAAGATACGTGGCAAAACAAAAGGAAATTTTGTTCTATAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTAGTTATGGCGGGAGCGGGCAGCGGAAAGACGAGAGTTTTAACTCACCGCATAGCCTATTTAATTGAAGAAAAAGATGTGAATCCGTGGAATATTTTAGCAATCACATTTACGAATAAAGCTGCGAAAGAAATGAGAGAGCGTGTTGGTAAACTATTAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 288038-288591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKW01000003.1 Enterococcus moraviensis strain DSM 15919 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 288038 34 100.0 34 .................................. CTAGTTGGTTTGGTCAAACGTTTTTTGGCTTAGA 288106 34 100.0 33 .................................. TAAGGTTCGTCAACTCCAAAGCTAATTCCGGAT 288173 34 100.0 33 .................................. TGATGATGACCTACCCTTTTAAGGAGAGAAAAC 288240 34 100.0 36 .................................. AAAACTTGTATTAAGTCTGAAAATCTGTGAATGGGT 288310 34 100.0 34 .................................. TAAATACCCATGTAATTCACGGCCACTTACTAAT 288378 34 100.0 36 .................................. AAAACTTGTATTAAGTCTGAAAATCTGTGAATGGGT 288448 34 100.0 34 .................................. TAAATACCCATGTAATTCACGGCCACTTACTAAT 288516 34 100.0 7 .................................. CATGTAT Deletion [288557] 288557 34 73.5 0 ..........AAC...A......ACT..C...G. | C [288584] ========== ====== ====== ====== ================================== ==================================== ================== 9 34 97.1 31 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : ATGGTGACGGTGGAGCAGATATTTTACCTTTATTCCGTTTGAACAAACGTCAAGGAAAAGCATTATTAAAGGAATTGGGTGCACCATCAGAGTTATATATGAAAGTCCCAACGGCAGATTTAGAAGATGATAAGCCTTTGGTAGCGGACGAAGTAGCTTTAGGTGTAACGTATGATGATATCGATGATTACTTAGAGGGAAAAAAGGTATCAGAGAAAGCAAAAAACACAATTGAAGGTTGGTATCAAAAAACACAACATAAACGACATATGCCAATTTCAATTTTTGATGATTTTTGGAAATAAGGGATAAAGATCTAAAAGATATTGTTAGTGCGAACCTCAAGTGCCCATAAAATTACTAGAGGATCCGCACCAATAATCGAAAGAAAAATGAGCTGATTTCGTTGTTTTTTCTCATTTTTTTTTAATGTTATGTAGATTTACGTGGAAAATTAGTTGTTGGAATCGATTATAAGAGATACTATCGACTTTTTCACG # Right flank : TACACACAAGTCCTTATGCAATGATAAGCCCATCCACTATTAAACCGAACTATATTTTACGATTCAAGCGAATATCATGAGATAAAAAGAAAGACTAAATACTTAGTCTTTCTTTTTTTACAGCGACTATTTTGATAAAACACCTTCATTTTGTTCAAATGGTTAAAAAAAGTGTAAAATTGAACTAGTTATCTGAAATGATTGATAAATTACTCTACAATTAATCTAACTATAGTAATTAAGAAGGTGAATGAAATCGTGAAAAAAGTGTTTAGGAAGAAAAGAGATATCGATAAAGAAGAATTTCTTTCATCAGAAAAAAAGGGTCAAGAAATAATGAATAGTGACATTCGAATTCCGAATAATATCAAAGGTTTATCTGATAGAGAAGTGCAACAACGGTATGCTGAAGGAAAATACAACAAAGAAGTTGAGGATCTATCTAGAACAACCAAACAGATCATCATGGATAACGCATTGACGTTATTCAACTTTATCAA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //