Array 1 5413-7774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYXQ010000005.1 Pseudomonas putida strain CFBP8769 CFBP876905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5413 28 100.0 32 ............................ AGGGCGGCTGTGAGGGCCTCTGTCATGTTCAA 5473 28 96.4 32 A........................... AAACCCTTACAAACTAAGGGTTTCAGGCTTTA 5533 28 100.0 32 ............................ CTTCTAGGACTCACCTGAATCGCTGGGTCATC 5593 28 96.4 32 .........................T.. AGTGATGAAGGTTCCTGGGAAAAAGCCCCAGT 5653 28 100.0 33 ............................ AGGGGTGAATTCTTCGTCGAAATCTTGGCCGAA 5714 28 100.0 32 ............................ ACCGGTTGGCGATGTCGGGATTGGCGTTCGGC 5774 28 100.0 32 ............................ TGCGGGTGACGATCCCTGACGCATCGCTCGCT 5834 28 100.0 32 ............................ GATTGGATTTCGAGCTCTCGCGCAAAGAGATC 5894 28 100.0 32 ............................ ACTGGATAACACTGGCTGATGGCTCAATTATT 5954 28 100.0 32 ............................ AGGCAGCGTCGATGCGCGTCGACCGCACCTCA 6014 28 100.0 32 ............................ ACCAGGGCAGCTTGTCCGTAGCCGCGATGCCC 6074 28 100.0 32 ............................ GGCAGGCAAAACCACGATCAAGGGCACCAAGT 6134 28 100.0 32 ............................ AGAAACAGAGCGAAGAAAAGCCACATCACCAC 6194 28 100.0 32 ............................ CGGTGTCTCGGGTACGACTGGTGACATGGATC 6254 28 96.4 32 ................A........... AGGTGGAGCAAAAGCGGGGTCAAAAGCAGATC 6314 28 100.0 32 ............................ AAGGAAACAAACGTCGTCAGGCTGCCATCAGA 6374 28 100.0 32 ............................ TTTCATCCACAAGCACTGCTCCGCTCGGCTGT 6434 28 100.0 32 ............................ CGGCTCCCAGGACGGATCGATTTTCTGAATGG 6494 28 100.0 32 ............................ TGTGAGAGGCCCGTATATGCTAGGCCCAAGCA 6554 28 100.0 32 ............................ CGAAGTCGTGATCTCTTTCACAGCAAATACGG 6614 28 100.0 32 ............................ TTCTGGATGGCCACAGCGACGGCAGCAGCGGC 6674 28 96.4 32 ..............A............. ATGCCGAGACTAATAATGCCAACAAGATAATT 6734 28 100.0 32 ............................ TGGAATTCATTCAGTAGAAGGCGTCTCTCAGG 6794 28 100.0 32 ............................ ACTAGGGTCGTGCTCAACGCCTTTGGTGATCC 6854 28 100.0 32 ............................ AGCATCGAACAGCTCAGTAATGCGATCTCGCA 6914 28 96.4 32 T........................... TCCATGACGCCTTCCAGAGGTTTGCCCTGAAC 6974 28 100.0 32 ............................ TCTACAGACGCTTTTTCGACTGCAATGGCGCG 7034 27 96.4 32 ............-............... AGCAAGGACTGATTGACCAGGTCGTAGAGAGC 7093 28 100.0 32 ............................ GACCCCAAATTTCCTTGCGGTGAATCCAGATA 7153 28 100.0 32 ............................ TCATGAACGCTGCGCAGGTCGGCAATCGATTC 7213 28 100.0 32 ............................ GATCAAGGGGATCTCTTCACGGTAGCCGGTAT 7273 28 96.4 32 ...........T................ CTGTCGGTGAGTGATGGGCGCCCATGGCTAGC 7333 28 96.4 32 ..........A................. ATTGCAGGGATCGCTGGAAGAACGCTTTTTCC 7393 27 92.9 32 ........-...T............... CTCGGCGTACGCGGCGAAAAAATTGCACGAAT 7452 27 96.4 32 ............-............... TACCTATATTCAGCCTCCGGCCAGTCTGGCGG 7511 28 96.4 29 ...............T............ CCCCCGGCTCCGCCTGAGAAAAAGAGGTC 7568 28 89.3 32 ....T.......T.............G. GGTAAGCATCTATAAGACTCCGGGGAGTTAGC 7628 28 89.3 32 ....T.C.....T............... ACGGGGCTCAGCTAGGCCCGAATCAGCCAACT 7688 27 89.3 32 ...TT...-................... AACCTGTAAAGAAATCCACAGCGCGACATCAT 7747 28 89.3 0 ....T.......AC.............. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 97.9 32 GTTCACTGCCCCCTGGGCAGCTTAGAAA # Left flank : CTCTGACCTGGCATCAGCCAGGCTTTGCTCGCACCATGGAGACAGCAGGCGGTTGCGCGAGCCCAACAGCACCGTCTCGCTGGAATACGATGCAAGGCTCAGTGGATTCGATGCTCAAGGCAATCCCAAGCCAACGGGCTGGTCGATGGTCAACCAGTTAGGGTTGGAGATGAATCAGAGCGTAAAGCTGGGCTCACTTTCCCAAGGAGCGCTTTGGAGGCCGCAATGCCTTGAGGTTTTCCTGGAGAATGGGATGCCACCTGGGCGGGCAGCAAAGCTTTCCATCAGGTCGGATGAATTCAGGAGTCTCAACAGCTTCAGGTACATTTTTGGCATAGGACTTATCAAGGACTTTTGGTAATATTGACGCCGCTCATGCGTCATGTTCTTTAACAACAGGATACCGAAACGATTTTTTGGAGGTATATTAATCCAATGTTTTCGCCCTAAAATAGGCCTCAGCCTCCACGCGCACGTAGGCTCAAGGACTTTTCGCTCTA # Right flank : AGGACTGATCGCAGAAGACGGTAGTAGCCTAGCGTTCACTGCCACCGAATTGCTAAATAGTGTCGTTCGGGATATCGGTTGCTGAACCAGCGCACCTGTAATCGTCGGTTTCGACACTGTTCTCGCCATCGCCCAGCATCGTGAAATGATTACTGCCTTGTTGTACCCACTGTCTACCACCCTAAACCCTAATCGTGCGCATCCCGGAACCCCTGCGGGCCCCGGTCTAAATCAACCCGACCGGCCTTACAGCCCAAGATCCGAACCCATACGATCTTCAATCGTTTTGGCACGCTTGACCCCAAGCTCCTTCAAGCTTAGACCCCACTGGCTCAACACAACTTTGTCATCCTCATCGAGCGCTCGGAGCGGGGCGTAGTCGATTTTGCCTGAGAGCTTTGTAATCAAACTGCTGATCGAAGCCCCAATTTGGTCGTTGATGCAGGCTTTGTAATCAGGAATGTGTTCATGGCCCTTCGGCGCCAGGCTTTTCATGCCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCCCCTGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 486512-488763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYXQ010000006.1 Pseudomonas putida strain CFBP8769 CFBP876906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 486512 28 100.0 32 ............................ GCCCGAGTACCTCCACGGCGAGCCCCTGGAGA 486572 28 100.0 32 ............................ AGCGCAGTGACTTCGACCTGGATCAATGGGTC 486632 28 100.0 32 ............................ CCAACCCTGGGGGTGTACGTCAGTGCCATCTG 486692 28 100.0 32 ............................ GTTGATCTGCAGTCAATGGGGCTTTGCTTTGT 486752 28 100.0 32 ............................ TGCTCGAACGCGTCCAAAGCCGCTTGAAAACC 486812 28 100.0 33 ............................ CCAAGTAGGGCTCAGCCTGCGGAGCAGGCGTAT 486873 28 100.0 32 ............................ AGGGACGTGCATCACCGACTGCTGTGCAGGCT 486933 28 100.0 32 ............................ GGCTGGGGCATGTGCGCTTGTGCGACAGCCTC 486993 28 100.0 32 ............................ TATCGTCAAATTCCTGGTGAATTTCTGAAGCA 487053 28 100.0 33 ............................ ACCTTGAAGTGCCATAAAAGCAGCCAAAGGCTG 487114 28 100.0 32 ............................ CTACTTGGGAAGGAATGTGCCGGGATTGGGGT 487174 28 100.0 32 ............................ TACGCATGAGGAAGCGCGCTGGCCCAGGGTCA 487234 28 100.0 32 ............................ TGGAGTGATGCGCGGTGACGCAGGGTTATTGA 487294 28 100.0 32 ............................ TCTCAAAGTTTGTGAACAGCTTCGTGACGTTC 487354 28 100.0 32 ............................ ACGTTGCCGGGCGCCTTGAGCTTCTTGGTTCT 487414 28 100.0 32 ............................ ATTCCAGGACGATTGGGCTGGATATAGCGCAT 487474 28 100.0 32 ............................ AAGCAATGGAATCCCTGCAAGAAGACGGACTT 487534 28 96.4 32 ..........T................. ATGGAATATCCCCCATGGTAGAGATTATCTAA 487594 28 100.0 33 ............................ TTGACGCCGTTTTCAGCCTTCACCATAGCCGCG 487655 28 100.0 32 ............................ AGCCCAGCTCGTCCAAGGCATGCCGAAGATCC 487715 28 100.0 33 ............................ ACCTTGAAGTGCCATAAAAGCAGCCAAAGGCTG 487776 28 100.0 32 ............................ CTACTTGGGAAGGAATGTGCCGGGATTGGGGT 487836 28 100.0 32 ............................ TTACAGCGAAGACGGTGAACCACCATTCATTA 487896 28 100.0 31 ............................ TGGGGCCTGCTCAGAGTCCGAGGTCTGCGCC 487955 28 100.0 32 ............................ GCGCTCGACTGATGATCGGGGAAGGGCTGCTT 488015 28 100.0 32 ............................ GTCAGGTCAGCGTTGTGAGAGGGTCGCGTGCG 488075 28 89.3 32 ...T..............T.......T. TCTTGGTTCGCCAGCTGAGATGTCAGGTTGAC 488135 28 96.4 32 T........................... TTATCGTTTTTGACGCCGACTAAAAGCCTGGG 488195 28 89.3 32 ....C......AG............... GATGAGCCACTCATTCGCGACCGTCAGGTCAG 488255 28 100.0 32 ............................ ACTAGCCCATCGATTTGGACAATGCGTCCGCA T [488269] 488316 28 96.4 32 ...........T................ TGGCCGAAAACGGCAGCAGGTGGTGGCCTGAA 488376 28 100.0 31 ............................ CGTCCAGGGGGAGGTCGTGCGCAACGAAGTG 488435 28 96.4 32 .........A.................. ATTCCGATTCCGCACACGCTGCTGTCAGAGGC 488495 28 92.9 32 C.......T................... CAGTAGTCATCTCGACCGCCCTACGCGCTGGC 488555 28 100.0 32 ............................ AGGTTCTCCGCAAGTTCGCCATTGATCGCCGA 488615 28 96.4 33 ..............A............. ACAGTCGCGCAAATCGTTCTGAAATCAAAAACA 488676 28 100.0 32 ............................ ACGGAAAACTGGCAGAAGGGCTCAAAGCTCTG 488736 28 92.9 0 ....A.........A............. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.6 32 GTTCTCTGCCCCACGGGCAGCTTAGAAA # Left flank : CCAGCGCTGATCGCCTGGCCTTCATCCTGGAGCAGCCTGCGATCAAGGCGGTGGTCGCTGCCGGCGTACTGAAGGCCTCGAAGGTCTCCTTAGTGCCCGATGATGCTAAAGAAGTACGTTTTGTTCGCAACCAAAAGCCTACCCGACTCAAGCGCCAGGCAGTCGCCCTTGACGCGGGATTGAAAGATCCTCGGTGCGAGCAATTTCGTGGTGAGTCATCCTCGATCTTGATTAAGCGGCTGGACGGCTCGGTTTATCCGATCTTCATCGATCGTCACGACAGCGAAGTGCGGCATGAAGGGAGTTACAGCAGCTTCGGGCTTTCCGGGAAAGCTGGTGCGACCTTCCCGCATTTCTGACCCGAAAGGGTGCAAAGCGCTACTTTCTTTAACAACTTAGGCAACCCAAATGCAAATGTGGCGGTATACTTTTGCATTGTTTTTTGGCCTGAAATCCTCTGGATAGTAGTTTTGGTGGGGGTTTTAGGTAAAATTTCTCTA # Right flank : GGATCAGATCCTAGGCCGCCACTCGATCAGATTGTAGTGGTCAACTGATCCCGGACACTGAATTGAGTTTTTCCTCAGCGACCGCAGGCGCTAGCCCTTCGTTGAACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCCCACGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //