Array 1 43289-39353 **** Predicted by CRISPRDetect 2.4 *** >NC_005871.1 Photobacterium profundum SS9 plasmid pPBPR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43288 29 100.0 32 ............................. TAATAGGATCTGATGGTATTGTTTTTCAATCT 43227 29 100.0 32 ............................. GCTAGGGCGACAAGTGGAACATCTGTGTTACA 43166 29 100.0 32 ............................. CTGAGCAGGCTGAGCAGGCAGCAATGAAAGAA 43105 29 100.0 32 ............................. TGATCAGTAATCGCCGCTGCTCTTGTCGCGAT 43044 29 100.0 32 ............................. AAAAAGCAAAAGCCGCTGTTGTCGCTCTTCAT 42983 29 100.0 32 ............................. CCAATTAACATCACCTTCAAGGCATGTCACAT 42922 29 100.0 32 ............................. CTAGCAATCGCTTAGCAAATGCGAGTAGGAAT 42861 29 100.0 32 ............................. TTCTTTGTAGTAACGGGCAGCAACATGGCCAC 42800 29 100.0 32 ............................. TTTAGCAGCCCAGTAAGCCAGCAATCGTTTAC 42739 29 100.0 32 ............................. AGCTGCACCATGCGAGCCAACGGTACGACGAA 42678 29 100.0 32 ............................. CCAGGAGCGGTACCCCAACGTTTTGCCATCAC 42617 29 100.0 32 ............................. GCACCCCCACCGGCTAACATACGGGCTTGTAG 42556 29 100.0 32 ............................. CATACAAAAAATGTAATGTGACACTGGGTGAG 42495 29 100.0 32 ............................. TTACAAGTTCTTCCACTGAATCAACTTTGAAT 42434 29 100.0 32 ............................. CTTGATAACGCCATCTTCGATAATCGTTGATG 42373 29 100.0 32 ............................. TCCATACCAACCGAAGCCATAGGCATACGACC 42312 29 100.0 32 ............................. TAACCAAACAACAATCAAAGGGCGTTTTACGC 42251 29 100.0 32 ............................. TTGACTATGCCTACTATCAGGTTTCTGTTCGT 42190 29 100.0 32 ............................. TAATCAGCCAACGCGGGGCGTAACTGTTCCCG 42129 29 100.0 32 ............................. TCTCTCGACTCACCAATAAAACTCATTGCTGC 42068 29 100.0 32 ............................. CAATCAAAGTTGACGATTACGCACATGCAATG 42007 29 100.0 32 ............................. GTGACGTACTGGTTGTGCATCATTTCGATACA 41946 29 100.0 32 ............................. TAAAGCCATTCTGTGAAGACTGCAATTGTGTG 41885 29 100.0 32 ............................. GTCTTACTCCAGTTATTTGATGTTATGAAAGT 41824 29 100.0 32 ............................. CATCTTGGTTTTCTGTGGCCAGATAATGAGAT 41763 29 100.0 32 ............................. CATGCAAAAAAATGGATGCTGGCATTTATCGC 41702 29 100.0 32 ............................. GAGCTAGGACAATGACAAAAATGAGGCTGAAT 41641 29 100.0 32 ............................. GTTATGAAATACCAATGGGACACGCTGTTAAA 41580 29 100.0 32 ............................. ACTCGAAGGTTAGTGCCCAATTGGGAGATACA 41519 29 100.0 32 ............................. ACGGCAAAATCATGTTGAGATCACCCAAGCAT 41458 29 100.0 32 ............................. AGGGTGAGGGGTTTGACTTTATACCTCTTTTT 41397 29 100.0 32 ............................. TTACCTTGTAACCTTCGTGGCTTTCAGGCGGT 41336 29 100.0 32 ............................. TCACCATCATTTACCTTGAATGCACTACCTGA 41275 29 100.0 32 ............................. GGCGAGAAAACACCACCAGGTAACGTTCAAAT 41214 29 100.0 32 ............................. CCACTAATTAGAATTAGCGTAACTAGTAAATC 41153 29 100.0 32 ............................. CGTTCTCTCAGGACGGTTACTGCATGGACGGC 41092 29 100.0 32 ............................. TAATGAATGAGATGAACGCTAGACTGTCAACG 41031 29 100.0 32 ............................. TTCCGCATCGCGGTCACGCTTATCGATGCCAG 40970 29 100.0 32 ............................. ATGCTGAGAATAAAAAGGAAACTCAGGTAGAG 40909 29 100.0 32 ............................. CAATGTTCCATGTAAGAGTTGACCACGAGAAA 40848 29 100.0 32 ............................. TTAACAGGTATCCGAAGCGTTCTAGGCCTAGC 40787 29 100.0 32 ............................. TACGGGAATATTCCGAACGGTACTGATGAAGA 40726 29 100.0 32 ............................. GACATGCCGGACATCATCGACGAGTTGAACAA 40665 29 100.0 32 ............................. GTGGTATCCGCAATTTCAGAACTACCTTCTTT 40604 29 100.0 32 ............................. CGCACACGGTTTTCCACGGCGTTCTGTATGGA 40543 29 100.0 32 ............................. TAACATATTGCTATTTGAGTTTTCATAGCCAT 40482 29 100.0 32 ............................. CATTGACGAGTTCAAAGAGCAATACCCTGATA 40421 29 100.0 32 ............................. GATATAGGAAAGGGTAAGTTTCGGATAAATAT 40360 29 100.0 32 ............................. GAGAATCACATGTTCACAACCCAACGTATGTA 40299 29 100.0 32 ............................. AATGCGGTCATCATTAAAGTGATCGGTAAGGT 40238 29 100.0 32 ............................. CTTCCGGCGTGCCTGATGGGGCTTTTGGTGTA 40177 29 100.0 32 ............................. TCGGTTGAATCAGGTCGGTTTGTTTCATCAAC 40116 29 100.0 33 ............................. GATGGTATCTATCTTACTGACTCAGCTTGCTAC 40054 29 100.0 32 ............................. CGGTGAGATTAGCGAGATAAATGGCACAACGT 39993 29 100.0 32 ............................. TTGAATCAAGCTGTAGCATTAAGATCACTGAT 39932 29 100.0 33 ............................. TGTTCCAAAAATAGAAAGCGCGAGGATGGGAAA 39870 29 100.0 32 ............................. CACACCCGTTTAATTGAATGTGCGCCCTCGAA 39809 29 100.0 32 ............................. TTGTAACAGTTGGGCCGTTGTCCCTTGAACCT 39748 29 100.0 32 ............................. ATATAGAACTACAGCACCAGATAGCTTTTTGT 39687 29 100.0 32 ............................. GGTTCATTCTAGCGATGAACTCTAACGTATCG 39626 29 100.0 32 ............................. GTTGAGGTTCGAACCGAAAGCCTGTTGTTGCT 39565 29 100.0 32 ............................. AAGTTGTCACCCGTACCCACTGCACCCATTAA 39504 29 100.0 32 ............................. ATAACGTTAACGGCTTCACTTAGATTCATTAA 39443 29 100.0 33 ............................. CATCCACTTTAGCTTCCGTTAAATATCCCACAA 39381 29 93.1 0 .....................A..T.... | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.9 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : TTTGAATGCGGGTGAAATTAGTCCTCCGATTCCATATGAAGACGCACAACCGCCTGCTTTACCTGAGCCGGAATCGATAGGTGATGAAGGGCACAGAACGGGGTAGGAAACATTATGAGTATGTGTGTTGTAGTAACCGAGGCTGTACCTCCAAGGTTACGTGGGCGTTTAGCTGTATGGTTGCTTGAAATACGAGCTGGTGTCTATGTTGGTGATGTTAGCCGCCGAATTAGAGAGATGATCTGGTTCCAAGTGGATAAGTTGGCAGAACAAGGCAATGTAGTGATGGCATGGGCAACGAACACAGAATCAGGGTTTGATTTTGTTACCTATGGAGAAAACGCACGTATGCCCGTTGATTTAGAAGGTCTTAGGCTGGTTAAATTTACATCACAAGAAATAGATAAAAAGCCAAAAAATTAGCTGTTTGTGCTCTTTAAAAACTTGGTAACTTTTATGAGCTTAGTTTTCTTCAATAAAAACAAGTGTATACTTTTAGA # Right flank : CCTATTTGACAGTATGTACATAATCGACACCGACGAACATTGTACAATTCAAATCCTCTGCCCTAAGCCCCAAAAGCACCACTTTTCTATCCATAAATACCCTGAGTAATTTGTTGCCAGAATCGACGGGTTCATTTGAGACTGATTTTTAACTCAAATCGTCAAAATGATCAGTTTTCTTAAATTGGTATGCGCTTGGTTGTTTATGGGTTGCTTTCAGGGGCGATGCCCCTCATATAATGGATAGCATTTACATTTAACCTTCATTCTGAGTATCTTCCGTTTTGAGCAAAGAAAAATATCATCAACAGCTTTCTGATGTCATCGAGAACAGCCTACTCCATCTTTATGGCCAGGTGGCGAGCAATGACCGGTTTGTTCCCCTGGCAAGACGCAACGACATCGTATGCAAGTTCCTTAAACCAAAATTAAAACAGCCGTGTTATAAATCCATCAAAGGCGACATCAAGCGAATGATTTTAGTCGGCCAACGTAAAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2189455-2187866 **** Predicted by CRISPRDetect 2.4 *** >NC_006371.1 Photobacterium profundum SS9 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2189454 28 100.0 32 ............................ AAAATCAAACGATTCATCAACCACGCGTTCGT 2189394 28 100.0 32 ............................ TTTGATGCGGTACGTGAAGGCGTAGAACTGGC 2189334 28 100.0 32 ............................ TTACGCCAGGTATGAACATGGCATCATTCAAG 2189274 28 100.0 32 ............................ TTTTATATGGCAGGGATCAGTATCGGCTACAA 2189214 28 100.0 32 ............................ TTATCTGAGATTAAAAGTACCACTGCGGGGTT 2189154 28 100.0 32 ............................ TTATGAGGGACTGCATAACCGCAGCAAATGAC 2189094 28 100.0 32 ............................ TGTAACAACGGGCTATATCAATTTATATCATT 2189034 28 100.0 32 ............................ TGTAGAAAAAGCCAAAGAGAGTGTATAGCATT 2188974 28 100.0 32 ............................ TTTTTTGCCGTTGTTCATAAGCACGTGAATTT 2188914 28 96.4 32 C........................... AACAGTAAGACCCGCTTCACATTGAGCTCGAG 2188854 28 100.0 32 ............................ TCAATAAAGGCGCGCTCACCATAATCAGGAAC 2188794 28 100.0 32 ............................ TTCTAGCCGGGGGGGCGGGGTTTGCAGGTGGC 2188734 28 100.0 32 ............................ TATTAGTCCTGAACAAGCTGCTTACTTCACAC 2188674 28 100.0 32 ............................ TGAGAATCAGTCACCGCAATCATGCGCGACTA 2188614 28 100.0 32 ............................ ATAAGTAGCGCATGCTGGTGCTACGTCTGCAC 2188554 28 100.0 33 ............................ ATAAGGTAAGAAGTCGAATCGATTTCAATTGAT 2188493 28 100.0 32 ............................ AGTAAACGAAACCCGAACAATTTGATTTAAGA 2188433 28 100.0 32 ............................ TGTTCGAACTGCTGTATTAAGATTGCGAGGGA 2188373 28 100.0 32 ............................ TATCTCTTGTTACCGGTGCGATCATCTCTGAT 2188313 28 100.0 32 ............................ TACTGAATACCGCAACCAAGCCCTAACTAGTT 2188253 28 100.0 32 ............................ TGAAACACACAGCCACTTCGGACTATATTCAA 2188193 28 100.0 32 ............................ TGCAATGATTTCATTCACCTTGGTAACTATTT 2188133 28 100.0 32 ............................ TGAATCTGACCGCCGACTTGGTTGCTCATGTG 2188073 28 100.0 32 ............................ TTCAGATGATTGCAACTCTGTTTCTGGATCGC 2188013 28 100.0 32 ............................ AATCACCATTACCCAACCCACGGAAAGAGCGA 2187953 28 100.0 32 ............................ TCTGGTATTCCACCGCCATTATGAAAAACACC 2187893 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAGCTTATTAAAGGACTTACAAGGTATCAAATGGTTGGGGGCATTAGCAGGGTATTGTCAAGTAGGTGAAATTACTGTTGTACCAGATCAGGTTCAATATCGTGTTATCTCCGTTAAACGCAGTAACTTAAGTAAAGCAAAATTGAAACGTTTAATCGCGAGAGGCAGTATAGATAAAGACGGTGAAAAACGTTACAAGGTAAAAATGCTAAGCCAAGGGTTTGATAATCCTTACCTAGATTTATTCAGTAGTTCAACAGGGCAGGTATATCGCAAATTCTTTGAGTTTGGTGATATACAAGCGACATCAGTTAGTGATGAGTTTGATTCATATGGGCTAAGCAACACAGCAACAATACCTTGGTTTTAACCAAAAAAAATGCTCTTTAAAAATCAGTCAGTAAAATCAATAAGTTACATCGGGAGGAGAAATATAGGTAAAAAAGAACATTTTTACTTAACTTCTTGTTGTAACTTATTTTTATGCTGATAATCTCTT # Right flank : CCAATGTTCTTTTATTCCCGTTAACTTCCGGCCACTTTTAGCGGTGCAGTGGATGATGAAAAGTAAAATGGTATAAAAAATTATCAAGCTAGGAGGTAAGTCAAAGTTAATGATCAAGAAGGTTATTATGATGAAGAGGAACTAAAGTCGATTAGTTTTTGAGTTTTACTTAACTTTTCAGTGTATTAAGAGAGGGTACTATGACAAATTATCAGCACTATTTGGCGACTGTTGAACGCGTGTACCCTGTCGTATTAGCAGAGCTTGCAAGTACATGGTGTGTCGAGTGTTCAGAAGGTAGTGGTAATCAAATTAAGTTGGTTGCGGCTAATGGAACGGTTTATCACCGCCTTGATGTCGCGCCAATTAATGCCCCAGATATGTGGACAGATAAACAACCGATCGCTGATGCATTTATTGAATATATTGCACGTGGATTTGCGCGGGTTACACCATTACGCCAGTCTGTTTATCGCAATAATATGAGCTATTGGTTAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //