Array 1 570406-569726 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKR01000001.1 Akkermansia muciniphila strain GP36 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 570405 31 100.0 34 ............................... TAATTGTTTCAACGCTCTAACAAATGATGAAAGT 570340 31 100.0 34 ............................... GGTAGTGCTAATGTATTGATTCACGAACCATAGC 570275 31 100.0 34 ............................... CCATGGCGCGGATGCGGCCCGGACGTTTGCCGAA 570210 31 100.0 34 ............................... CCTGAACTTAAAAACAACGTTCATTATTGGGGTT 570145 31 100.0 34 ............................... ATAGGCTATTGGATATTCAAGTCCGTTGTCTGCT 570080 31 100.0 34 ............................... TTTGCGACAACATATTTCAGGTCATTACCGCGTT 570015 31 100.0 33 ............................... CCGCTTGGAAGCAATGAAGATAGCCATGCAGAA 569951 31 100.0 33 ............................... TTTGTATGCTCAAGTGTTTGGAGGAAAGAACAA 569887 31 100.0 35 ............................... GATAAGACAAGAACTGAAAAAACAAGGGAAGAATA 569821 31 100.0 34 ............................... CTCCAGCATCACCGGGACGTCCTCGCCGCGGATG 569756 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.4 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 124684-125249 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKR01000002.1 Akkermansia muciniphila strain GP36 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 124684 31 87.9 34 ........-.T.-.C.................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 124749 31 87.9 36 ........-.T.-.C.................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTTACA 124816 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 124882 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 124949 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 125016 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 125083 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 125150 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 125215 33 100.0 0 ................................. | GC [125234] ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : CGGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 200899-200335 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKR01000002.1 Akkermansia muciniphila strain GP36 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200898 36 100.0 30 .................................... GCGCGGACCGCTGGCGGGAGTGTCTCACAT 200832 36 100.0 30 .................................... GGTGTAGCCATTCAGCATACGGCGGATTCA 200766 36 100.0 30 .................................... CGGATGACATTTTCAGGGGTACGGGCAACG 200700 36 100.0 30 .................................... AATCTTCATCACGTTCTACCAGTCCCATGC 200634 36 100.0 30 .................................... AGAAGAATCTCCGTAGGGTCTGCGTCATCC 200568 36 100.0 30 .................................... CCTGCCTTTTTCGTCCACCGCTACTATCTG 200502 36 100.0 30 .................................... ATGTCATGATTAAGGCCCTCGTCCTCTTCA 200436 36 100.0 30 .................................... CAATCCAGGCGAGCATGTCTTTGAATGCCG 200370 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAGGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTTCAGGACGTGCTGAGACATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : AGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //