Array 1 607347-608837 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFEZ01000001.1 Paenibacillus pasadenensis strain R16 NODE_3_length_734055_cov_63.9358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 607347 32 100.0 35 ................................ CATCATCCTCGGGGCGCTCGGCATGAGGGATGCTT 607414 32 100.0 35 ................................ TCGCAGATAGGAGAGGTGAGCCCGCGGCACGATGA 607481 32 100.0 34 ................................ TCGATGAAGGAGATCCCGGAGGCGACCAGCGTGG 607547 32 100.0 35 ................................ TCGTATCAGGGGTTCAGCGGCTACGGCGGAGCGCG 607614 32 100.0 35 ................................ ATGAGAGGAGGTGAGAGCAGATGACTGCAATCAAA 607681 32 100.0 34 ................................ ACCAACTCGCTCGGCTTCGTCGTCTTCTTCGTTC 607747 32 100.0 35 ................................ CGTTTGGCGCTCCTTCGCGATGTTGTTCAGGTGAG 607814 32 96.9 35 ..................A............. TGTAAGGTTCTGTGAATTTCTTTACCTTTTGATCT 607881 32 96.9 37 ..................A............. TCGCCTAGCTCAATCAACCTTTTGGTGATTGTACCGC 607950 32 96.9 33 ..................A............. CACTCCGATTTCATATCTTCGAGTCGTGAAAAA 608015 32 96.9 34 ..................A............. AAGCGGAGCCGGTCGGACGTCGCCATTTTGATTA 608081 32 100.0 34 ................................ TCGTAGCGCCCAACCGTAAGTACCGCGTTATAAC 608147 32 100.0 33 ................................ GGATCTGATCGTCCAGGTCGTTGACGAGGTCCT 608212 32 100.0 34 ................................ CAGGCCGCCGCGCTTGTAGTGGTCGGGGCGTACG 608278 32 100.0 34 ................................ CACACGATATAGCCTCTCGACGAGGTGTTCGATT 608344 32 100.0 34 ................................ CGTACATGAGCGAATAGCAGACGCATTGCTTGAC 608410 32 100.0 35 ................................ GGCGGTTGGTAGGCCGGCCGGCTGCCGGGAGCCGC 608477 32 100.0 36 ................................ GCCCCGCTGATGCCGCCCATGATCGCCCCGATGCCC 608545 32 100.0 33 ................................ CGATAAGTGGGGAAGCCGCATACAGTTGCCCCG 608610 32 100.0 34 ................................ CATAGTGTTTTTCGTCGCCTCGAACTGCTTGCGC 608676 32 100.0 34 ................................ GGGTGCGTGAGCAATCGCGTCAGGACGGTGTTGG 608742 31 87.5 34 ...A.........-......A..A........ GCGATTCGCGCGTCTCTGCCATCTGCTCCGCCGT 608807 31 71.9 0 ...C.......GCAT.......-A....G..G | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 97.7 34 GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Left flank : CGAAGGCATCGGCATGAGCGAGGAGCAGGCGCGCCGCATCTGGGAACGCTTCTACAAGAGCGACGAAGCCCGCGGCGGCCGCGGCGGCACCGGCATCGGGCTGTCGATCGTCAAGCATATCCTCGACGCGCACGGCTCGCGCATCGAGGTGCGGAGCGAGCCCGGCCAGGGCAGCGAGTTCCGCTTCTGCCTCGTGCGGGCGGGCTTGGCCGGTTCCGACGAGCAATACCGCGAGTCATCCGAGAAATAGGGATGACTCGCGGCTTTTTTGCATTGTTGGCGGCCGCGGGCTGGCAGCAGCCAGCCAGGCGGCAGGTGCAGCAGGTGCAGTGCGAATGCCAAGCTCCCATAAAATCTCCGGGAGATTCGCACCTCGAAAGTTGTCGAATCCCATCGAAAAAATGTTATCTTGATTTTTGTCAAGTCAAAACTTATGCTAAATTCAGAGCAACAGTAGAAGCTGGCACCCCCTTTCAAGGCTGGAAGCGCTGTTATTCGCT # Right flank : GCCTATTTCCGTAGCCTTTGGAAAGGCGAGGGAATCTTTCCCTATTGGGAGCTTGAAAAACTAGGCGAGCGCTTCTCCTCACGAGAGATCATAAAAAACAGCTGATAAAAGCACAAAACCAACCCCCTCTGCGCGAGGCGGTTGGTTTTGTGCTTTTTCACAGGCAGTGTTCCCCCGCCTTCGCCCTGGGAGGCATTTCAAGCCTCTTTCCAGACTCGTTTCGCCTGACCCTTCCTGTTCTATTCTATAATTCCCCTCTCATACTCTATAACGATGAGATGGAAGTAGAAGAAGACTCCGTCTACGGCGGGAAAGGGGACATGTGGAGATGCGGCAGGAAAGGGAGCGGGCGCGCTGGACTTGGGACGAAGCTGTCCGAAGGACAGAGGGGACCGAGCCGGAATCGGACCCGATGATTACGGCGAGAGATCGGTCTTTGCCGGCCGGCGAAAGCAGGAGCGAGGAAGTCCGGCAGACGAGAGATTCGCCGCGAGAAGCAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 25232-24729 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFEZ01000002.1 Paenibacillus pasadenensis strain R16 NODE_4_length_160760_cov_53.8271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25231 32 100.0 34 ................................ AACTGCTCTCCCTCATCAACAAGACGGCGCGAAT 25165 32 100.0 34 ................................ TGCTGCAGGGGGAGGTCGGTATCGTAAAAGTCGA 25099 32 100.0 36 ................................ GATCCGGCGACAAACACTTACAAGGAAACGCCGCTG 25031 32 90.6 36 ..........T.A...A............... TGCAGCCGCTCGGCTCTTTTTTTCAACGTGAAGTAA 24963 32 93.8 37 ..........G.A................... GGATCCTGCAGCGTCATGATCTGCGGCAGCGCGCTTT 24894 32 90.6 36 ...A......G.........A........... AGGTGACGGTAGAAGTCAATGGCATGCGCCGCTGCC 24826 32 93.8 34 ..........G...........A......... GGTAGCCCGATCACATTCAAATGGTAGTCCCGCG 24760 31 78.1 0 CG........-.A...A....AC......... | T [24757] ========== ====== ====== ====== ================================ ===================================== ================== 8 32 93.4 35 GTCGCTCCCCACTGGGGAGCGTGGATTGAAAC # Left flank : AAGATCGTTCATCCTTATTTGAATGAATCCATCCCATGGGGGCTCGTGCCGCATGCTCAAGCGATGCTGCTGGCGCGGACCATTCGCGGCGATCTGGAAGAGTACCCGCCTTTTTTCTGGAAGTAGGAAGGAGAAGAGCGCTCGATGCTTGTTCTGATAACCTATGATGTGAGCACTACGACGAGCGATGGACGGAGGCGGCTGTCCAAGGTGGCGAAGACATGCCAGGATTACGGACAGCGGGTTCAGAACTCCGTATTTGAATGCGTTGTGGATGCTTCGCAATTCCGACGGCTGCGGTATGCTCTGGAGGAGCTGATTGATCCCGCTACGGACAGCTTGCGGTTTTATAACCTGGGTGATAGGTATAAGAGCAAGGTGGAGCATGTTGGAGCCAAGGCTTCCTATGACATGGATGGACCGCTGATTTTATGAGACGGAGCTGGTGCGAATGGCAAGCTCCCATGAAATCCCCGGGGGATTCGCGGAGGTTCGCCGCG # Right flank : CGCTGTCCGACCGTTGTCGCTTTTTTACAATATCCTGCACGTTCCTTTCTCTATAATCGAGACTATCAGACGTCCAGCCGAGATCGCGATGGGCCGCGCTGCGGTGCCGCAACGGGGTTCCGGCCATCCGGCGTCGATCATAACGAGAGGTGGAATTAGGATGGACCATAATGTGAGCACCAGCGGCGCTACAGGCGAGCATACGACGAACGGGAGACCGCACGGCTACTCCGCCCTGACGCCGTTCATCGTCGTCAGCGATCCGGCCGAAGCCATTCGCTTCTACGAAGCTGTCTTCGGAGCCAAGACGAAAAGCGTGACGGATGTCGGCACCGACGGCAATTCGTTCATCGTGCACGCGGACATCGACTTCGGCAACGGGTACCTGCAGCTGGGAGCGGCCAATCCGGACTATCATCTCGTTCCGCCGCCCGGCGGAGGCGACGCCTGCTACTCGCTCGGCGTCTACGTCCCCGACGTCGACCGAGCTCTCGAGCTGG # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 34139-35382 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFEZ01000002.1 Paenibacillus pasadenensis strain R16 NODE_4_length_160760_cov_53.8271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 34139 32 100.0 35 ................................ GGACGGGGTGAGCGGGTACTATGTGTACCGGAACG 34206 32 100.0 34 ................................ CAGGCGTGCGCCCGATAAAACCATGGAGGCCAAG 34272 32 100.0 35 ................................ TTGGATAATTACCTCCTGAAAATAGAGTTATATGC 34339 32 100.0 34 ................................ GCCATCAAAACCATAGACATTATAGATCATGGCC 34405 32 100.0 35 ................................ AGCGTATCGAGGAAGTCGTCCGAGAAGTCCGCCCC 34472 32 100.0 35 ................................ CGCGAAGCGAACGGCCTGGACAGCGTCCTGACGCT 34539 32 100.0 35 ................................ TTGCCGAAAGTGATTTCAGAGTAGCACGCCGACGC 34606 32 100.0 34 ................................ TCGATCAGGTTGATCGCCCTCTCGACCTGTCCCT 34672 32 100.0 34 ................................ TGACTTTGCAGCTGCATTTGCCGCTCGTGCTGTT 34738 32 100.0 34 ................................ ATCCATGTCGTTTTGTCCATGAGAGCCAGAAGCT 34804 32 100.0 36 ................................ CAGACCTCGTACAGCGCAAGCAGCCCGGTAACGATC 34872 32 96.9 33 ..............................C. ATTTGGCTTGATCCGTCGACGGGCGTGGCGCCG 34937 32 100.0 35 ................................ TATTATTTGACTTTTATTTTAACTCTAGGATTTTT GG [34953] 35006 32 100.0 34 ................................ AGACCCCCTTTACGTTTGGGTGTGCACATGAGCC 35072 32 100.0 34 ................................ CGTCCACGTCAGCCGGATGCTCATGGCGTCATCC 35138 32 100.0 35 ................................ TGCGCGGTGCTCTCCCACTGCATGGCCTCGTAGTG 35205 32 93.8 37 ...................G.G.......... TACTCAAGGAGGATACCCATGAAAAAGACTGACATCC 35274 32 93.8 43 ..........A.....A............... AAAGCTCACTTGAAATTCCAAAGTTCCAAAATTCCAAAATAAA T,A [35297,35299] 35351 31 78.1 0 TA..........-.........AA.CC..... | A [35359] ========== ====== ====== ====== ================================ =========================================== ================== 19 32 98.0 35 GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Left flank : CTAGCTTTTCGGCGTAAAGCCTGACGGCCATGAGATGGTCGTGCACGCTCTCGCGGCGGCCGTCCGACTTCCGAATATGGGCGATGTACTCGGGAATAGGACTATTTTCTTGATCTCTCATTACCGCACCTCCTTAAAGGACTTTAGACCCAATACTAATAACCTATTCTAGTCGTATACTTCAACATAATCACACACAATCCTCCTTTTATCTTTTATTTTCCCAATTTTTCTTTATCCCTCCCCTATAGGGCATTTATTGAAATATGATCTTGCAGAAAAAGCTTGGCTCGATCGGAATCATTGCTTATGATGAGGACAAGAGCGGGAGTGCGAATGCCAAGCTCCCATGGAATCCCTGGGGGATTCGCACCTCGAAAATTGTCGAAATGAATGCCATTTCACCTTAATTAATGATTGTCAAGATCTTTCCTATGTCTAATCAGTATAGGAACTGGCTAGTTTATACCCCAAGGGGTATGGAAGCGTTATTTTTTGCT # Right flank : CAACCAATATGACAACGCGAAGAAGCAGACTACGCAGGTCTCGCCTGGGGGCATCGGTTAACACAGAACTCCGCTGATGCCGGTCGCCGAACCACGGGCCTCTTCCCCCGTCACTCCCCGCCTTGGCTCTCATACTTGCTCCGCAGCCGCCGGACCGCGTCCATCAGCTCGCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAAGTCCATCCACTCGCGTCGCTCCGCCTCTCCCAGGTCGATGATGCTCATCAGGCGGCCGCTCCTCATTTCCGCCAGCTCCTTGCGGCTCATTTCCCGCGCACTCTCGTTGGCCCACCCGGTCGTCTCCCGCATCGCCTCTTGGATGATGCCCTGCACATCCGACGGCAGGCTTTCCCAGAACGAGAGGTTCATCACCACGGCGTACCCGAGGTACGCATGATTGCTGACCGTCATATAGTTTTGCACCTGATAGAACTTCTTGCTGTAAATATTCGTGATCGTGTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 906360-904972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFEZ01000004.1 Paenibacillus pasadenensis strain R16 NODE_1_length_3401078_cov_52.3397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 906359 33 90.9 35 ............ACC.................. ATGCGATTGCGGCTTTTGCGGAGATTGCTGATTGC 906291 33 90.9 36 ............ACC.................. ATCTGATAGGTACCGTTGCAGGTCAGCCAGTGGATA 906222 33 90.9 36 ............ACC.................. CCCCAGCTTTTGGCCCTGCTCAAGCAGGCGACGAAC 906153 33 90.9 34 ............ACC.................. TTGATCCGCCGGAAGACGGCGACCGCCTCCGCGC 906086 33 90.9 34 ............ACC.................. CTTCGCTTCCTCGATCATATCCGTGTATTCCCTC 906019 33 90.9 35 ............ACC.................. CCCAAGGTCATCAAGATGGACACGAAGGGGGAGAG 905951 33 90.9 35 ............ACC.................. CTGTTCCATCAAAAAGACATTCGCGTTGATCTCCT 905883 33 100.0 35 ................................. GCAAATGTATTGTCAAACATTAAGTTTGCATACTC 905815 33 100.0 35 ................................. GAGATGTTGCCGATTTTGGTCGAGAGCGTCGCGTA 905747 33 97.0 35 ...................A............. TCGGGACCGGTCAGGCGGCGCTTGTTGCCCGTCTC 905679 33 100.0 37 ................................. CGATACCCTCCAGAGCCAATCCGTTACGACCCTTGCC 905609 33 100.0 34 ................................. GGACGGATAACGGTTATGGAACACCGCCTCGTCC 905542 33 100.0 35 ................................. CATGATGCGCCGGCATCAGCAGAAGGAGCGTCAAC 905474 33 100.0 33 ................................. GGTATTGGAAGTCCCGACGTAAAACAGCCCAAC 905408 33 100.0 35 ................................. ATGGCGTCCCGTTGCTCTGGATTTTCAAGCTCTCC 905340 33 100.0 33 ................................. CGCGTCAATCATCTCATTGGCAAACTGGTGTCG 905274 33 100.0 35 ................................. GCAATCAAGGCACGCACAAGATCGCCCGGGCCGGC 905206 33 90.9 34 ...........CA....A............... TTCGTAGACCATCGCCAGCACGTTTCCGATCATC 905139 32 90.9 36 ...........CA....-............... GAGAACTCGACGCTGATCGGCATGTACTTCATCAAG 905071 33 81.8 35 ..TA........AC.......A...G....... GGTCAGGAGGGCTCGGGGCCAGAAAGGGGCTTTGA 905003 32 75.8 0 ..TA......CA-........A....C.A.... | ========== ====== ====== ====== ================================= ===================================== ================== 21 33 93.9 35 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Left flank : CGCCGCTCCGGCGCTCGTCGACGGCAAGACGTACGTGCCGCTGCAGTTCTTCCGCGACGTCATGATGCTGAACAACGCCTACGTGTTCGAAGGCCAGATCGACATCAACAACCAGGAGAAGATGGAGTAGGATCTATGGAATGAACGCAGGGCTGTTCCCGACGCCGTCTCACGGCGCGGGGGCAGCCCTGCTTGGCTTTCAGACGGCTTCGCGTGGAGGCAGGTTGGAGGCGATGGAAGCACGGCGCTTCCGGCCCGATAAGGAAGACATTGGCAGCGTAATGAAGATCAAGTATGATTGAAAGTAGAGCGGGTGCTTGGTGCGAATGCCAAGCTCCCATGAAAACCCCGGGGGATTCGCACCTCGAAACTTGTCGAATCGAGCCTGAAATCACACTTTATCGATTATGTCAAGAATGTGGTCATACTTTTTAAGTTGATTGAAGTAGGAAAAGAGGATGGTTACATACCTGCAGGGTATGTAACTGCATTTTTTCGCT # Right flank : TAAACATGGCCACGTATGGCACAATAACATCCTAACGTCGCTTCCTACACGGGAAGAAGGAAGAAATGCCCGAGCTCCAGCGATTAACGCCTGCCACACCTTGCCCTTCCCCGCACTCCCCCAATCCACGACAACGAGAAAACAGGTAAACGCGACATGCTGCCGCGCTTACCTGTTTTGTATTCTTCCCGCAGCCAAAGCTTAATCCAAGTCAGCTAGGCAAGTGTCCGAGATTCCAACAAGAATTTTCCTCATGTCTATTCCGTCATCGCCCTCTCCCCATTGCTCCTTCGGAGAACATAAGAGTTGTACTCATCCTGCTCGATCTCCAGCCTGCCCTGAAAATCAAACCCGCATTTTTCGAGGACTCGATTGGACGGCAGGTTGCGGACAAGCGCGACCGCGCACAGAGCCTCGACATCGGCCTGATCAAACAAATAACGTATCATCGCTTGTGCCGCTTGAGCCGCATAGCCTCTGCCTCGATGATCCTTGGAGAC # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAC # Alternate repeat : GTCGCTCCCCGTACCGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2326023-2329713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFEZ01000004.1 Paenibacillus pasadenensis strain R16 NODE_1_length_3401078_cov_52.3397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2326023 32 100.0 35 ................................ AAAAATGCTTCAGGTGTATCTATTTTTGCAACCTC 2326090 32 100.0 35 ................................ TGGCCGTCCTTCCAGACCTCGTACACGGCGGCCGC 2326157 32 100.0 34 ................................ TGTTCCTCTTTGTCCTCTACGTCATCCAAAAGAA 2326223 32 100.0 34 ................................ GATACGATCCAGGCTACCGTACAGGGAGACTTTG 2326289 32 100.0 34 ................................ CGACGGGAATCCGGCCATGATCTATAACGTCTAT 2326355 32 100.0 37 ................................ GCGCGACCATGCCCCCGCCGAGCCCTTGCAGCACGCG 2326424 32 100.0 35 ................................ TCCGGCATGAAAAACATCAACGTCAATCAAAAGAG 2326491 32 100.0 35 ................................ CACCCGGGCACCGGGGCTGGCTTTTGAGCGTCCAC 2326558 32 100.0 35 ................................ AGTGGACTTTGCGTCTTGGGAGAACGGTCACTTAC 2326625 32 100.0 37 ................................ GAACCAGAACATACCGGGGTCCTCCTCCGGCCCGTAG 2326694 32 100.0 33 ................................ CTTGTTGAAGAAGTCGAGGCCGAGGAAGGCGCC 2326759 32 100.0 34 ................................ GGTAACGCATCAAAATCCCTTGCATTCCCTCGCG 2326825 32 100.0 35 ................................ TCGACATAGGGCGTATAGCAGCTGGAGGTGATTAA 2326892 32 100.0 34 ................................ CAAAGGTCATCAAGCTCGACACCAAGGGCGAGAG 2326958 32 100.0 35 ................................ GAGCGGCAACGGCGTGACCGACGCTGCGCTGTCGG 2327025 32 100.0 34 ................................ CTGATCTGGGCGATCAACTGGGTGGTGCGTCGTA 2327091 32 100.0 33 ................................ GCGTCTGTCGGTACGGCCATCGTCACGAATTTT 2327156 32 100.0 34 ................................ AAAAGTGAAGAAATCTCCGTACCAGTTAACAAGC 2327222 32 100.0 36 ................................ CGTCATGGTATCTCCTCCTAGCTCCATCCGGTCCAC 2327290 32 100.0 35 ................................ GACAAGAGGTACGTCACGAAGGCGGTGTGGGCGTC 2327357 32 100.0 34 ................................ GATATATTTGTTCGCCCGCTCATCAAAATTGTCC 2327423 32 100.0 33 ................................ CTGATTTAGATTGTGGAGGTGCAGTTTTTATTG 2327488 32 100.0 35 ................................ GTAGGCGCGTGGCTTAGCGTAAAAAAGTTGCGCTT 2327555 32 100.0 34 ................................ AAGCCCGCAGCGCCGCCGCCTTTGTCGCGGTTCG 2327621 32 100.0 35 ................................ CCCGAAGCAGTGTGGAGTCGATACAGGTGTTCGCA 2327688 32 100.0 35 ................................ ATCATGTTTGGCATTTGGTTGGTCAGTCGGTTTAG 2327755 32 100.0 35 ................................ GAGAACCAAATCGTCGACCTCATCGTCAAACTTTC 2327822 32 100.0 33 ................................ CGGGAAGATGTCGGCATAGCTGATTTCGTCCGG 2327887 32 100.0 35 ................................ GGCGACTCCCGCAGGAGTGCCGAGACCTCTTTTAC 2327954 32 93.8 33 ...........CA................... CTTCACCCACTTTCGGAAAGCGTCGTCGTAGCT 2328019 32 93.8 36 ...........CA................... ATCCTTATGCAAGGTCCAGCCATATCCGTGATGCTC 2328087 32 93.8 34 ...........CA................... TCTCAGTTCCAAAGCCGTCGAAGTCGTACGTCAT 2328153 32 93.8 36 ...........CA................... CTGTTATGTAGCCGTCAGTATCATAAGCAGATCCGC 2328221 32 93.8 33 ...........CA................... ATTTTCGTCTGTCAGGCCGATCGAATGATCGAC 2328286 32 93.8 34 ...........CA................... CACTTTTGCATTGCTGCATAAGTCGGATTGGTAA 2328352 32 93.8 34 ...........CA................... GTTGAACCCCTCCACCCATGGGAAGTAGACAACC 2328418 32 93.8 36 ...........CA................... GGTTACACGAGAAGCGCATTCAGCCAGATCGAATCG 2328486 32 93.8 35 ...........CA................... ATTTTACGTTCCTCCATTTAACCAAAAAAAGCATG 2328553 32 93.8 35 ...........CA................... CTTGGAGACGCCTTTGGGCGTTTCGCAAGCGGCAT 2328620 32 93.8 35 ...........CA................... GCGCTGATCGCGCTATACATCGTCGTGCGGAACGG 2328687 32 93.8 33 ...........CA................... CTCAATCGACATCTCAACCGCCCGGTCGATCTC 2328752 32 93.8 34 ...........CA................... AACTACACGCAGATTTTCAAGACACCGTTCGGCG 2328818 32 93.8 34 ...........CA................... GCCAGTGATCGGATCAATTCGCGCTGCCAATTGC 2328884 32 93.8 33 ...........CA................... CGGGTCCGCTGCGCCCGAGTCCGTCCAGTAGCC 2328949 32 87.5 34 ........T..CA...A............... ACAAAAAAACCCGACGAAACTTTACAAAAAGCCT 2329015 32 93.8 34 ...........CA................... GATCCGCGCTAAGCGAGCACAAAGGAAAGCCGAT 2329081 32 93.8 34 ...........CA................... GCTCCCATCGCGGCCGGGAAGGCAATCGTGAATG 2329147 32 93.8 35 ...........CA................... CACGCCCGCGCCGGAGTAATTGCCGCCGTAGTGCT 2329214 32 93.8 36 ...........CA................... AGCCTGCCGTCGAGCCAGCTCGGATACTTTCGCAGC 2329282 32 93.8 34 ...........CA................... TTATCGCAGGCGGGATCTCCCTGATACGTAACAA 2329348 32 93.8 33 ...........CA................... TTGCCGGCCCGGACGCCGGCATGCTGAGCGACA 2329413 32 93.8 33 ...........CA................... ATGAAGGGCAAGGCGACGCATGAGGCAATTCAG 2329478 32 93.8 37 ...........CA................... TCCGGCTGCCCCTCTTTCGGAGCGTGGTACTTGAAAT 2329547 32 93.8 36 ...........CA................... TTGTTTGCGGGGTTTTTAAACGTGTTGTAGGCGCTG 2329615 32 96.9 35 C............................... AGCTGCGCGCCGCTGCCCATCACTACGTTGCGCAC 2329682 32 81.2 0 ...........CA.T.....A..AT....... | ========== ====== ====== ====== ================================ ===================================== ================== 56 32 96.7 35 GTCGCTCCCCGTGGGGGAGCGTGGATTGAAAC # Left flank : CGAGATCATCGGCATCACGATGCCGAACAGCGTCGAGCTCAAGGTCGCCGAGACCGAGCCGGGCGTCAAAGGCAACACGGCTCAAGGCGCGACGAAAAACGCGACGCTCGAGACCGGCTACACCGTCCAGGTGCCGCTGTTCATCAACGAAGGCGACCTGCTGCTGATCGATACGCGCGAAGGCCGCTACATCTCCCGCGCCTAGACGCTTGTCCGACCGTGCCGCTCCGCTTTGGCGGAGATCGGTTGTGGGATTTGCAAGGCCGTCCGGCTTGCCGGACGGCTTTTTTGTTATTTTGGCGGCCTCGAGCGGGAGCCTGTTGCGGCCGGTGCGAATGCCAAGCTCCCATGAATTCTCTAGTAGATTCGCACCTCGAAAATTGTCGAATTCGATCGAAAAATCGCAGTCTTGATTTTTGTCAAGTCTAAACTTATGCTTATTTTATAGTAGCAACAGTTGCCGAAATGACTTTTCAGCGCTGAAAGCGCTGTTATTCGCT # Right flank : CATCTACTCTGTAATGCGGGAGTGTGCTATAATCGATACTTGATTGCAACAGCTATAGGTGGGGAGTGAGACAGCGGTGTCGTTGATCGTAATGAAGTTCGGCGGCAGTTCGGTCGGCACGACGGAACGCATGCAGCGAGTAGCACAACGGATCGTGGAGAACAGGGATGCGGGCCATAAGGTCGTCGTGGTCGTATCGGCGATGGGAGATACGACGGACGATCTGATCGACCAGTCCAAACGGCTGAATCCGAATCCGCCGGCACGGGAGATGGACATGCTGCTGACGACGGGAGAGCAGATTTCGGTCGCTCTGCTGTCGATGACGATACATGCGATGGGCCGCAAGGCCGTATCGATGACGGGCTGGCAGGCAGGCATCCGCACGGAGCCGCTGCACGGCAAGGCGCGCATCACGGACATCCAGCCCGACCGCATCCACGCGGCGCTGGAGGAAGGCGGTATTGTGATCGTCGCGGGCTTCCAAGGGATGACGGAGC # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGGGGGAGCGTGGATTGAAAC # Alternate repeat : GTCGCTCCCCGCAGGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //