Array 1 166613-164831 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEE01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2243 NODE_5_length_282164_cov_5.4782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166612 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166551 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166490 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166429 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166368 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166306 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166245 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166184 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166123 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166062 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 166001 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165940 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165879 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165818 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165757 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165696 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165635 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165574 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165512 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165409 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165348 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165287 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165226 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165165 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165104 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165043 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164982 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164921 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164860 29 96.6 0 A............................ | A [164833] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184238-182745 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEE01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2243 NODE_5_length_282164_cov_5.4782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184237 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184176 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184115 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184054 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183993 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183932 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183871 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183810 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183749 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183688 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183627 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183566 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183505 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183444 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183383 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183322 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183260 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183199 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183138 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 183077 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 183016 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182955 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182894 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182833 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182772 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //