Array 1 53-552 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000023.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00046_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 53 30 100.0 39 .............................. CGAGGGCCCCGAGGAGGAGGATTAGGAGGAAGAGGGAAG 122 30 100.0 38 .............................. TGTATACCCTCAATTGCAAATTCGTGTTGTCAATGACA 190 30 100.0 35 .............................. CGTGTATGACGAAGACGCACGGAGAGAGTGGGAAG 255 30 100.0 38 .............................. GCGGCTTAAGGTGGTGTATAACTCAAACTCCAAAACCG 323 30 100.0 38 .............................. TGAGGAGTTCGTGAAGGGGGTGGCCGCGGGGAAAATCG 391 30 100.0 37 .............................. ACGGCATGAGCTTGAAGTTTTACCGGGATGGCGAGGT 458 30 100.0 36 .............................. GCCTTTTGCGGTCACTATGTCTAGGGCTCCGGTGCA 524 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGAGAATTGAAAGGGAGAAGCTCAGGGCGCTGGGGCTTATCACGTCCTGGCGG # Right flank : | # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 150381-150610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000004.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00020_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 150381 30 100.0 37 .............................. GACTGGGGGAGTTAGCAAATGAAAGCACGGCGCCCGG 150448 30 100.0 35 .............................. GAGCAGTACGACGCAAACAAAGTCGTGCTTGACTA 150513 30 100.0 38 .............................. ACTAAGTCATACACGTGGAAATGCAGCAGGGAAACCCT 150581 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GAGGAGGAGCCGATGCTCTGACCCGGAGGGTTTGCTCGATATTCCAGCTCCTTCTCTCGTTTTTGAGTTTCAGCGGGCTAATTTTCGCATTCGGGACATTCTCAAAGGCCGGGAAATCTTTAGTAACTTGAGGTTATTATCTAACATTATGTGTCAAAAAATTCTTGAATTTGTGACGAAAATTTTTCGAAGTTCCTGGACAAGGCACCGACGCCGGGTTCTAAGCCCTACCCCCATGTAGATACGATTATTTTAACTTTCGTCCGTCCAGAGCACTGGGGAGTGAGTTTAAAGCCCTGTTTCATCCCGGGAAGTCTCATGAACAAAAACGTGCATGAAAAAATCTGGGGGTTCAAAAGGCTTCGCTGGCGTTAAAGGGCTACCCACAGGTCGTGATATAAGGCGTGGATGGGCTCCGTTATCCCCCCCTCCCGCGAAAGCCTTATAAAATTCAAGTGCTCTTATCAGTTTAAAGGGCAAAAGAAGGAAAAATCCGTCCT # Right flank : ACTGGAAGCCCTCACGTAACTGTTTAAAGCGCTCTTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 38-476 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000006.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00022_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 38 30 100.0 36 .............................. GTGCGGTATTTGACATAAACGCCCCCAACACGAACA 104 30 100.0 37 .............................. AACACGGAATTGAAAGAGCGGATTTTAGCGCTTTTGA 171 30 100.0 39 .............................. CAAGGCTTCGCGTCGTAGTGTATGCGGTCGTCCCAACCC 240 30 100.0 37 .............................. TCGTTGGTTCAGCTACTAAATCGGACTTCAACGCTAC 307 30 100.0 40 .............................. AGAGGTTGTTAAAACTTCCGAAGGACCCGAAGGAATAAAT 377 30 100.0 40 .............................. GAGAATATATGGCGGTGTAGAGCACAGGAAGCGCAAGCAT 447 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 99.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAAT # Left flank : TTGTTTACAAGGATGGGTACCTACAAAGCACATACAAG # Right flank : CTGGGGGAGGTTTCTGGGGTTTTTCTGGCATCTTTCTGAGCCCCCTAAGTTACCCCCTTGTTCAGCGTTCCGTCGGTGGCTACTTTTGGTTAAACTGAAAGCCGACCAACTTTAGAGAATCCGAGGTATACTCCCACGCAGCGCTATCAGCCGCTTGTTCTTTTTCTTGATGTACATCCAACATGGAAATTGTAATATACAAGTTATGTTGCATAATCAATTGATTTATATCGCCTGGAGGGGAAAAATATGAAAAAATTGAACGTCCTAATGTTAGTACTACTTTTGCTTTTTTCCGCGGTTCCCCTCAGCACGCACTCACTCGCGGAAGCCACCACGGAGCCCGCGGCCACACCCACCTTGATGAACTTTACACTCTTTGGAACCCCGGAGGAGGGAATTGAAAGAGTTGCGAGCGGCAGTCTGGACCTCCTGCTGTCGAGCTACCCCCTCTCTACGTACAACTCCCTCCCTGGAGGGGTCATTGCAAACCTCTCACT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 32-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000005.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00021_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 32 30 100.0 36 .............................. CGTCGAGGGATTTCTTAAACGCCCGGCGTAGGGCCG 98 30 100.0 37 .............................. CGGGGAAAATCCCGCGCGGGTCCTCCATGTCGTCCAG 165 30 100.0 37 .............................. TCTTTTACGCTTGGGTGCAGAACTCTCCAGCGGCCCA 232 30 100.0 41 .............................. TCATTGACAACAATAGCTTCTGAACTTCTCCCCAGTCGTCG 303 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ========================================= ================== 5 30 98.7 38 GTTGCAATAAGACTCTAAGAGAATTGAAAG # Left flank : AAATCCTGCAGGAGTTGAGCGACGCAGGGGCG # Right flank : CTGGGGGAGGTTTCTGGGGTTTTTCTGGCATCTTTCTGAGCCCCCTAAGTTACCCCCTTCTTCAGCATCCCGCTAATCCTCGGCTTAAGAGTGAGTTTTCACTGGTTTTGAGGGAGTTGATAGGGCTTACATGGAATTCAGAGCCTCGGGGAGGAGTGCAGGCCCCGGCAACTAAACTGGGTTTACCGCAAAAACAAAACCCTTCAATGGGCTCTTTTCAGCCAATCGGGCACTCTCAAGTGGTTTTGCATGTACAAAAATGCACTACACCTCTTCCGCTTTTACAACTATCGAGAGTAGATGGGTGCACCGACGAGTTGCCGATAGGGTGGGGAGAAAAAAGGCGGGCTCAGCCCGCTATCTCCTGAATCTTCTTTCTAACCAGGGTGTTCACGAGCTTTCCGTCCGCCCTTCCGCGGAGCTTCGCCATGGCGCGACCCATTATCATTCCCATCGCGCCCATGCCCTTGGTCTTTATGACCTCGATGTTGGCTTTGATG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 68603-68899 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000005.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00021_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68603 30 100.0 37 .............................. AAACCGCACGCTCCGGGTCATTCATCGCCTCTTTTAT 68670 30 100.0 36 .............................. CGACGTGGAGGTGTATATGCGGGGGCCGGACGGGGA 68736 30 100.0 36 .............................. CCGTTAGATGGCCTTATTCTGTGGTTCCACCCCGAC 68802 30 100.0 38 .............................. AACTCGACAAAAGGCGCATACTCGACGTTAGTGCCCAC 68870 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAT # Left flank : CTACGCGCCGAGTGTTTTATATTTTTGGGGGCACACATTTAAATCCCCCTGTTGCCAAAATGAGGGTTTGCCAACAAATTAATTTGAAAGGATATCTGCTGATCCGCCTTTGGAAGTCTTTAGTAACTTGTTGTTATTATCACTCAAAAAGTTATACGTTTCCGGGAATTTTGTAACGAAATTTTTCCGGAGTTTTGAAAGGCGGCCTGTCAAAACCTCTTGAGTATCCGTTCCTCATGCAAATTGGATATTCTCGAGTGAAAAGGTGAGAGAAGGTATTAATTCGGATTTACGGTTCTCAAAACGCTCGGGAAGTCTCATGAACATGGTTGGGCATATTCTCAACGGGGGAATGAGAGTAGGGTTCTGCCTAAGGGCTCCGTTTACAATCCTCGAATTGGGGGCTTCTGCGGGCTCTTTAAAGTACCCTTTGCGGAAAAGCTTATAAGATTCAAGTGCTCTTATCAGTTTAAAGGGCAAAAGAAGGAAAAATTCGCCCT # Right flank : TAAGGAGGGGCATAACGATGAGGGCGGACGGTGGGCA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 215200-214629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LANF01000009.1 Palaeococcus ferrophilus DSM 13482 Pfer_Contig00025_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 215199 30 100.0 39 .............................. AAGAACTTAATAAGCGGGAGAAGCTTAGGCGCTTGCTTC 215130 30 100.0 42 .............................. CCTTGGGTCGTTCTCTTCGGGAGCGTGGACGAAGTAACGGGT 215058 30 100.0 39 .............................. ACAGGCACTTAATCTGGTTCCTAAAAGAGGAATCCTAAA 214989 30 100.0 36 .............................. GCCCTCCGGGGAGAACCCCGAAAGGGCTTCAGGGAA 214923 30 100.0 36 .............................. TAACAAACTTATCAAGGGTGTGCGTGCGGGGCTGGC 214857 30 100.0 36 .............................. ACCTTTGCTTGTGGGTTGCGCATGGAATTTCGCTAG 214791 30 100.0 37 .............................. ACCGTTAAAACGTGCGTAGCTCCGTATATCAGAAAAT 214724 30 100.0 36 .............................. TTCGTTATGAACAGAAAGCTTATAGCCAGCTTTGAG 214658 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== ========================================== ================== 9 30 99.3 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTTCAAAAACGTGGATTATGAGAACCGCACCCTTG # Right flank : TGGGGGAGGTTTCTGGGGGTTTTCTGACACTTATCAGGGCCCCCTAAGTTACCCCCGTATTCAGCTTTCCGTCAGTCGTTATCCGGGCTGAGACTGGTTTTTCGCTGGTTTAGAGGGGAACTTGTGGGAGGAGCACTAAGGGACATGCTTCCGGTGCGGCAACTTTAAAAACTCCTTGGGAAAGCTCTCTCCGGTGAGAGCATGAAGATAGCGGCGCTCTTTTCAGGAGGGAAAGATTCAACTTACGCCCTCTACTGGGCTTTAAAGAACGGCTTTGAGGTGAAGTACCTCGTCAGCATGGAGAGCGAGAGCGACGAGAGCTACATGTACCACGTACCCAACATCCACCTGACGGAGCTACTCGCGGAGGCAATAGGAATTCCCCTTGTGAAGGCGAGAACGAGTGGAGAGAAGGAGAGGGAAGTGGAAGACTTAAAGGAAGTCCTGTCGAAGCTCGACGTTGAGGGCGTTGTGGCGGGGGCCCTCGCCAGCCGCTACCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //