Array 1 32485-32337 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000028.1 Photorhabdus bodei strain CN4 CN4_25_scf0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32484 28 100.0 32 ............................ GACAGGTTGTTCCGCATCTTGCGGATGATGAC 32424 28 100.0 32 ............................ CTGCAAAATCAGTAAAGTGGGTTAGGTCTATC 32364 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGAGGGGTCTTATTTACTACAGGAAGCTGGTGGAGCTGATAATGTTGTTAATTTTTCACTTAATGATCGTGTGGCATTACAGTGGGATATTCCGCAAAATAAAACCATTTCATTAAGGGCTAGGGCTGCTACAGCAGGCCCTGGGACTTGGACCACCACTGCAACTTATATAGGGGTATCAAGACCTCGCAATATCGCATTTAGCTACATAGTGAGAGCAGAGTAATGGCTGAAAATACGCTTGATAGCCAGAATATAGAAGTATTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGCAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGAACCTAAATTTTACCCTTTTTTAACAGCCAACTATAATTCATTGATTTTTAATGAAATTTAACCTCTCTCATAAAAAAGGTTTTTTTTGCTTTTGGTAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : GTCTAATGGAGGTGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAAAGTATTGTTGTTAAACACAATGCTGCAAACAAAAACAAGTAATGCAGAGCTAGCGAGAAAACTAGGAACGCGTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGATAGAAAGCGCGTCAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTATACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCGTCGGTTCTACGAATAGAGAAAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCGATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGGCGGATTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79112-80459 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000017.1 Photorhabdus bodei strain CN4 CN4_25_scf0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79112 28 100.0 32 ............................ TCTTACGTGCCAGAAGGCAAGAGGACGCTAAC 79172 28 100.0 32 ............................ CACAGTAGTTGTAACCGATTCATTTAAATTGG 79232 28 100.0 32 ............................ GCCGCAGCAACTAATCGACTAGTAATATCTGA 79292 28 100.0 32 ............................ ATTCAGATCAATCGGTACAGGAATGCCGGCGA 79352 28 100.0 32 ............................ AGGAGGCAATGCAGAAGAGAAGCCAAATTCAG 79412 28 100.0 32 ............................ GGTCACTTCGGGATAGAGTACTCCGTCAAGTG 79472 28 100.0 32 ............................ TGATGTTTTAGTATTCGTATCTAACTTTATGA 79532 28 100.0 32 ............................ CGGAAAATTAAATACCTTGCAACTTCGCATGA 79592 28 100.0 32 ............................ ACAATAAATTCCTAGATGCAATATTGCGTTCT 79652 28 96.4 32 T........................... GTATGAGCTTTGGGAAATTTTTGATGCCGCAG 79712 28 100.0 32 ............................ GGCACAAAGGTGACCGAGAACATCGCAACCCC 79772 28 100.0 32 ............................ ATCCGCAGGTTCATTAAACGACACTTGCCAGT 79832 28 100.0 32 ............................ CAAATGGCTCAAAAGTTTATATTTCAAATAAA 79892 28 100.0 32 ............................ AGTTCACTACATTGTTTTCGCCAATTATTGGT 79952 28 100.0 32 ............................ GATTTAGCTGGAGTATTTTTTGTTTTCTGAAT 80012 28 96.4 32 .....T...................... GTGACATGCGCAAAACAAAGACGACTGATGCT 80072 28 100.0 32 ............................ GCTTAAACAGAATCATGGGGCGCTCTGGCATT 80132 28 100.0 33 ............................ TGTCCAGACGCATGGCCCGGCGCAAATCTGCGA 80193 28 100.0 32 ............................ TCATAACAATCACCTTTTATTTATTAACTCAC 80253 28 100.0 32 ............................ TACTACGCCTACTACGAAGGGTATGACTGTAA 80313 28 100.0 32 ............................ AGAGACTCAACCAACGGTTTCCCTCAGTCATG 80373 28 100.0 32 ............................ GTTGCTATAAATTTGGTCCAGTGAGGGACTGA 80433 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATATTGGCAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAGTTATTTGGTTTCTAATCAATAGATGAAGGGATCCTGACACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCAAAGTGTTCAAAATAATGTTTGAATTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAATATCTTAAGGCAAGTTTAGTTGCTCTTATGTCTGTTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCCAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGGTGGTTGAAGTCATTTTTTGTTTTAAATTGCAAATGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85697-86744 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000017.1 Photorhabdus bodei strain CN4 CN4_25_scf0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85697 28 100.0 32 ............................ ATTTCACGACTGAGTGATTGATAGGGTGTAGT 85757 28 100.0 32 ............................ GGCTTTTGCCGAACCCCAGTCAAGCTCTGTAA 85817 28 100.0 32 ............................ AGGGTGACATTACGCCACTGGCCTTTACCATG 85877 28 100.0 32 ............................ CTTGCCAACTCCCACACACTCTACCCGGATCA 85937 28 100.0 32 ............................ ACCGGAGAATGCTTCCATATCTGATGCACCCG 85997 28 100.0 32 ............................ GCCATCCGGGGGCAATAAATATGACTATGAAC 86057 28 100.0 32 ............................ TGTATCAGTATCATTAAACGGACGAGTTGAAG 86117 28 100.0 32 ............................ GTTTTCACGCAGATTAAGCAGAAAGACATATA 86177 28 100.0 32 ............................ GATTTCGCAGTGACCCACAGATTAAAATGTTT 86237 28 100.0 32 ............................ TTAACCTGGTCTACTGCACCAGCATCGATTAG 86297 28 100.0 32 ............................ ATTTCTAACGCGCCGGGTGAAATTGATAACAC 86357 28 100.0 32 ............................ TGCTCATAACATGCTTATTGGGATGGATGAAA 86417 28 100.0 32 ............................ GGATGTTGTAGAGCCGCTGGATTATGAAAGCC 86477 28 100.0 32 ............................ ATAAATCAGCCCTTATCTTGTCGTGCAATTCC 86537 28 100.0 32 ............................ CATGAATTTTTATCCTCTGTTTTACACCTGCC 86597 28 100.0 32 ............................ ATTACTTAGTGTTTGTGTGATCATGAGTTCAA 86657 28 96.4 32 ...........T................ CAGTAAAATTGACCCATGGGGAGATTTACCGC 86717 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAAACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCTGTGAGATAAAAGGTGATAATTTTTGTTGATGACAGAGATCAGTGAATGGCTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATGCCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAACG # Right flank : TAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3155-2645 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000070.1 Photorhabdus bodei strain CN4 CN4_25_scf0070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3154 28 100.0 32 ............................ TGTACGGCAGTGAACTTATTGGAATTTAAAAT 3094 28 100.0 32 ............................ AGAAGCGACGATGATACAGCGGTCATTAAATT 3034 28 100.0 33 ............................ TTACGGCCTCTTTGAGTCGCTTGAGATATTCAC 2973 28 100.0 32 ............................ TGGCTGGACGATGGTTTCCTGATAGAAGTTCA 2913 28 100.0 32 ............................ AATTAATCGAACCCATAATGCCAGTTTAGCGG 2853 28 100.0 33 ............................ TGCTATAGATGAAGAAAAGCCGAGCTTAACTAA 2792 28 100.0 32 ............................ TCATGAGCAATGCGCTGGCGTTCTTTTTCAGC 2732 28 96.4 32 ....G....................... GGCAAACAAATGACCCAGCTACTGGAATACGA 2672 28 85.7 0 .......................TT.TT | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCCTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTATTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGCGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTGTTAAGCTGCACTGTCACCAGATAAAGTAAATTAGTCATGATGAATTAAATCACCATTGAAAATCTGCCTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGATGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCCTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAACTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : AACGGAGGCAATCATGAGTCATACCCGTTACGAAACTAATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGAGCAGGTAAACTCTCTGAGATCGATATAGTTAATATTGCCGAGAAAATTGAGGACGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGTCAGTTTTGTTGTCCCATCTTTTGAAGTGGCAATTTCAATCTGGGCGTCGTGGTTCAAGTTGGCAACGAACTATTAAAGAGCGGAGAAAAGCGCTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTATCGATGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTCTATCCTGAGTAAGCTCCAATGAGTTGACTTATTTTGACGCACTGACTTCGATTGGTGCGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9598-10550 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000088.1 Photorhabdus bodei strain CN4 CN4_25_scf0088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 9598 28 100.0 32 ............................ AATCCGAGAGCCATCTGACCAATATCATTGAT 9658 28 100.0 32 ............................ TCAATCCACAATATCGAATGATACCGATTAAT 9718 28 100.0 32 ............................ AGATGTTAATAACAGGGGAAGCCTTCTTGTAG 9778 28 100.0 32 ............................ TTTAGGAACGTTAGCAGATAAAGCAACACGGA 9838 28 100.0 32 ............................ AGGAGCTTCCTTGCTCCCGGATGAGCCATAAC 9898 28 100.0 32 ............................ TGATGAAATTGCTCGCGTCGCGCGATGGGAAC 9958 28 100.0 32 ............................ TGGTTTTGATGAACTGTGAGCATTTGTATATA 10018 28 100.0 32 ............................ TATGAGACATTAGCCAGGGACGACCATCAGGA 10078 28 100.0 32 ............................ ACTTACCTTAGGGATCGGAGAATAAGACACTT 10138 28 100.0 32 ............................ TCTATTATCTTGTGCGTATTTTTGTGCTTCTG 10198 28 100.0 56 ............................ GTGGAAACAATTATGTGGTGGTGAAGAGTGGAGTGCACTGCCGCACTGCCGCACTG 10282 28 92.9 33 CC.......................... AGATAGCTAGTGCGTTCCTTGCACTTTATTCGC 10343 28 100.0 32 ............................ TTAAATGGCTACCATCCATGCTATGCACAAAG 10403 28 100.0 32 ............................ GTATTGCTGTAAGTGAAACCTTAAACTTCTTG 10463 28 100.0 32 ............................ TTGATCAAGAACAAGCAGATAGAAATGTCTAC 10523 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ======================================================== ================== 16 28 99.1 34 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAGACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCAGTGAGATAAAAGGTGATAATTTTTGTTGGTGACAGAGATCAGTGAATGGTTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGAATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAATGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATACCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAAC # Right flank : TAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5799-6788 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEY01000059.1 Photorhabdus bodei strain CN4 CN4_25_scf0059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5799 28 100.0 33 ............................ CTCCTTTCTTAGTAATTTTTCCTAAAGATTCTT 5860 28 100.0 32 ............................ TAGGGATCCCCCTTTATGCGGTCAAGCGTATA 5920 28 100.0 32 ............................ AGGTAGAATGGACGGAAAAAGTTTATCACGAA 5980 28 100.0 32 ............................ ACCACGAGTTGTCAGAAATCACCGCTCAACGT 6040 28 100.0 32 ............................ TCTTCGATGCAGTTCAGCAAATAAGCGTCTTC 6100 28 100.0 32 ............................ TATATTAAGCGAATGGAGCCTGTCCGAATGGT 6160 28 100.0 32 ............................ TGCAAGCCTAATACCTGCTGATTGATTACCGC 6220 28 100.0 32 ............................ AAGAGTAGAACCACTAAAAATAGAACCTCCAA 6280 28 100.0 32 ............................ TTTAAAAAATATTGCGACGAACACATTGGAAA 6340 28 100.0 32 ............................ AGTCACTACCAGTAAACGATGCACATTCAATA 6400 28 100.0 32 ............................ GGCTGAAAAAAACGAAGAGGTTGTGGCTCTTA 6460 28 100.0 33 ............................ AAGGCTAATGCAATTCAAGAATATGCTGATTAT 6521 28 100.0 32 ............................ TCCATAATTCAGCCCTTAGTTTGTCATGCAAT 6581 28 100.0 32 ............................ TCCGGCGCGGCTGGATGAATAAATTCAGCCCA 6641 28 100.0 32 ............................ TTATGATTATGTGGAGAACAGGCCAAATTCCG 6701 28 100.0 32 ............................ ACCGAAAAGGTCAATACCGCCGCAACCACCGT 6761 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGTCAATACAAGACAAACCAATACCGGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGATAGCCTTTGGGAACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGTTGGTTGCAGTCGCTCCCACGTTTTTCTGCGTCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //