Array 1 1468946-1470602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPQB01000002.1 Vibrio parahaemolyticus strain SC4 contig.2.cir, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1468946 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 1469006 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 1469066 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 1469127 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 1469187 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 1469248 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 1469308 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 1469368 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 1469428 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 1469489 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 1469549 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 1469610 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 1469670 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 1469731 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 1469791 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 1469851 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 1469912 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 1469973 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 1470033 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 1470093 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 1470153 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 1470213 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 1470273 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 1470333 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 1470393 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 1470455 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 1470515 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 1470575 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //