Array 1 462081-463872 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEQH01000001.1 Clostridium minihomine strain Marseille-P4642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 462081 33 100.0 33 ................................. CCTCCTCTACGACGGAAATCGCCGCAGTCGCAG 462147 33 100.0 36 ................................. ATTACCAAATCCGAAATAGGGAGGGAATAGACTTTG 462216 33 100.0 34 ................................. GATTTCGGCGAGAGAAAGTTTATCGAAAAACTAG 462283 33 100.0 35 ................................. TTTGATTGGGTCAAATGCTTGAACGCTTTGATCCA 462351 33 100.0 37 ................................. TGACACTTCTCCGCATTGTGTATGGTTACAACTTCCA 462421 33 100.0 35 ................................. CAGAGGATAGGATAGAAGAAAAAAGCAAACTGGAA 462489 33 100.0 35 ................................. CAGAGGATAGGATAGAAGAAAAAAGCAAACTGGAA 462557 33 100.0 35 ................................. ATCCAATAGGGCATGAATGCCAAGCAAAGCCAAAG 462625 33 100.0 34 ................................. TACAATTTTTTTTGATAAGCCCATCTGACTTACC 462692 33 100.0 34 ................................. TACAATTTTTTTTGATAAGCCCATCTGACTTACC 462759 33 100.0 37 ................................. ATCGGAAGACGGATTTTCCTGATAAATAAGATTTACC 462829 33 100.0 34 ................................. CCGCTTAATGGAGTATAACCCTGCATTGCCCGTT 462896 33 100.0 34 ................................. GGTACAGGCAATTGGATGGATGCACCTTTCCACC 462963 33 100.0 36 ................................. ACTTGGTATGGATTTGGCTTACACACCGGACGCGCT 463032 33 100.0 34 ................................. CGGTATGAAATCTATACTTGGAATTTTGGCAATG 463099 33 100.0 35 ................................. TGTTAGCAAGGTAGTGGGGGACACATTATGCTTGG 463167 33 93.9 35 ..................GA............. GACGAGGCGATATGCGCATGGGTGCAACTTAAAGC 463235 33 93.9 33 ..................GA............. AAATAAACAGAAGAACGAAGCTTTTCATTTGGA 463301 33 93.9 36 ..................GA............. ACCCGTGCGCCGTTGCTATACTCAATGCAATTGATA 463370 33 93.9 35 ..................GA............. CCAGCTGATCATTTACAAATCCATAGATGGATTGA 463438 33 97.0 34 ...................A............. GCCATTGAGAGTGTCAGGTACAACAGAAGAAGCA 463505 33 97.0 34 ...................A............. AGGTGATCTTGCACTAGCACTGACGGTATAGATA 463572 33 93.9 34 ..................GA............. AAGTGCATTAAACAGCCTGAAATGGATACCACTA 463639 33 97.0 35 ............T.................... GCAAAAGTATCCCTGCGTCATGTGTGCTCATAGGG 463707 33 93.9 34 ..................GA............. CAATCACACCACTCAAACTCTGGATACGATTCAC 463774 33 100.0 33 ................................. AGTTTGTCCTTGGTAAGGACGAGGTCACGCGTT 463840 33 87.9 0 ...A..T............A............G | ========== ====== ====== ====== ================================= ===================================== ================== 27 33 97.9 35 GTCGTTCCCCACCCGGGGAGCGTGGATTGAAAT # Left flank : TCTCTGGATAGAAAATGAGCAACCGTGTTTTTTATCCGGTTGATTTCAGTTATTAAAAATATTGTATTTTCATTTAAAATAAACTTTCTATTTGACCAAATGGTTTAGCTGCATGTAAAACAGTGAATTCCCTATCATTTGTTTCAGGGTTGCGCTGGATGGTTTTAAAATATATAATTAAAGTAATTGAACGTAATATGATTGCAGTTCCCTTTGTTTAGAAGTTTTTATTACAAGAACCGATGGGCATGTGAATTTGAAGTTGTAGGATGCCCCAAAATCAAAAGTGGAGTTGAGACTATCTTATGAATACAGAACCATTCTGAGAGGGGGGATGATTTTTGCGCGAATAGCAAGTGCCCATAAAATCGGTGAGGATTCGCACATGAAATTCTGTAATTTATAACACTAAAAATACATAAAGTATAATTTTTTTCGAGGCTTATGTTCTTAACTACCAAATATTGAAACAGAATTGCCTGTTATTTATTTGGTTTACA # Right flank : GAAGCTTTACGATGACGCCTATGATGTCATATCTGTATTTTCCCTCATATGAGGCTTGTGGATGGGAATACTGATTATCAAATGGGTTTACTTTCCAAGACTAAAGTGGTTCCTAATGGCGTTGGAATGTCTCATACACGAGAGGAGAGACCTATGAAATTAAAATCAAGAAGATGCTTTCTGCTTTCTGTGCTGGTTACAGTACTGTTCCTTTTCAATGCAGTGTCTGCATTTGCAGCAGAACAGGCTATACCGTCCATTCGGATTGATGCCGTTTTGCAGAGGGATGGCTCTGCAGCTATCACAGAAAATTGGGATGTGCGCGGTGTTTCCGGCGGCACAGAGTATTACAAGGCGCTGCATAACATGGATGGAATGAGCGTCCATTCGCTCATGGTAAAAGATGAGTCCGGAACACAATACAAAACGCTGGACAGCTGGGACCCAAATCTTTCCCGAGAAGAGAAAGCAGGCACCTGTGGTATTTTAAAAACATCCAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCACCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGTTCCCCACCCGGGGGACGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13521-11289 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEQH01000006.1 Clostridium minihomine strain Marseille-P4642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 13520 33 100.0 33 ................................. TTCGCAAGTTGCCCTTGAGAAGCACATGCGGGA 13454 33 100.0 34 ................................. TCAAGAAGAATGATCGTAGGCTTCCCGGCTCCGA 13387 33 100.0 34 ................................. TTCTTCTGCCGGGCCGCGATGCCCTTGAGCCCCT 13320 33 100.0 34 ................................. GCCGGAAACCTCGGGACGATCGAGATGCTCTTTG 13253 33 100.0 33 ................................. CAAAAATCCTGCACATTGACAACGGCAAGGACT 13187 33 100.0 33 ................................. AACGAACACGAAAGGAGCCTTAACATGGCAAGA 13121 33 100.0 33 ................................. GCAAGATCAAGGCCCGCAAGCTGAAAGACTGCA 13055 33 100.0 32 ................................. TTTAAGCCTGTCATAAATCGTATTCAAGATTA 12990 33 100.0 33 ................................. ATCAGGTCGTTATGGGGCTTGTCCACCATTACG 12924 33 100.0 33 ................................. AGAATTGGATGGATTCGGTTGATATTGATAAAC 12858 33 100.0 33 ................................. CCGCAGATACCGTCTATCATCCTCATGTAACAG 12792 33 100.0 33 ................................. CCACTGCTGCACAACAGGCATATCCCCGACCGT 12726 33 100.0 33 ................................. AAAAGCCCCCACATATTGTGTGTTGATATTTTT 12660 33 100.0 34 ................................. GCAAGCATCCCTACACGATGTGTGTGATCTCATT 12593 33 100.0 34 ................................. AAACTACCAGTACGCTTATATTCTTCTACCGCAT 12526 33 100.0 34 ................................. ATGGCCTCTTTGATGATATTGTATTGCTTGGGAG 12459 33 97.0 35 .............T................... TATTTGTCCGAATCTAAGGTTTTTGGCAATATGCG 12391 33 97.0 35 .............T................... GAACAGTGGGAGACACTTTAGGTGAAGCTATCACC 12323 33 97.0 33 .............T................... TCCGATGCGCTCCCAATCGCCGTCCCAAACAAT 12257 33 97.0 33 .............T................... CCCATAGCGGACTATGGAGTGGATACCGAGATA 12191 33 97.0 34 .............T................... AGCTTGTTTGTGCATATGAACATTTTAAGGATTT 12124 33 100.0 35 ................................. ACTGGACAATCAAATCTGTAAAACTCTATGAGGTC 12056 33 100.0 34 ................................. GGCCGTGGCAATAATACAGCCCCGCGGCAATACG 11989 33 100.0 33 ................................. ACGATTCGGAATTTGATACCACTGGTCTGATTT 11923 33 100.0 33 ................................. ACAAGCATTGCTTGGAAAAGGCGCAACTGCCGG 11857 33 100.0 33 ................................. TGCTGGGTTTTATGTGAAGTTTTTGGCTGATGT 11791 33 100.0 34 ................................. TGGCGTTTGAATCTTAGGATACTTATTTAATTTT 11724 33 100.0 34 ................................. TGTGCCGCCCTATGGTTATAATAAAGTCAAAATA 11657 33 100.0 34 ................................. TGTGCTAAGCCCAAGTGCTCCTAAAATTGCGACC 11590 33 100.0 33 ................................. ATTAAAAGTAAGGGAATCATCAACCCGAACGGA 11524 33 97.0 33 .............T................... CGTCCAACAGCACCACTACATTAACCACGCAGT 11458 33 100.0 35 ................................. AGAGATAACCACCTATTACGGCAGCAGCGGGCGCA 11390 33 97.0 36 ......................C.......... ATCCAGCAGGAGGAAGCAGAACCTGATGCCCAACTG 11321 33 93.9 0 ..........C..T................... | ========== ====== ====== ====== ================================= ==================================== ================== 34 33 99.2 34 GTCGTCCCTCACACGAGGGACGTGGATTGAAAT # Left flank : CAGATTCGCGGAGATATTGACGAATATCCACCATTTATCTGGAGGTAAACTATGCTGGTTCTCATCACCTATGATGTGAATACCGAAGACGCCAAGGGCAGCAAGCGATTGCGCAAGGTGGCAAAAATTTGTGTTAATTATGGACAAAGGGTGCAAAATTCTGTGTTTGAGTGTCTTTTGACCCCTGCCGAACTTTGTATTGTAAAAAATCAACTGCTCAGTGCTATGGATGACACCAAAGACAGTTTGCGGATTTATAATCTTGGAAACAGCTATAAAACGCGTATTGAGCATTATGGTGCCAAACAAACATATTCCCCGGAAGAGCCGATGATTTTTTAACGCGAATCATAAGCGCACAGAGAATCCTTGGGGGATTCGCACACGTAAATTTGTAATTTATTTTAAAAAATATACTATTAGTATACATTATATTTTCTTCTATGTTGAAATACTTCTAAATATTAACCTTAAATTCCCCTAGATTTGTTTGTTTCGCA # Right flank : AGCAAAGACCGCCTTTCCCCTATGTTGCACGACGTCATCCCTTACCCCAAAAATAGATGCGTGAGTTAATGATACAATTCCAAACCGGAGCTTGTTCGTTTTGACGATTGTTCTCACTTCTCGTCGGACTTCTTTCCCCGGGCAGCTGATTCATTCACACCTGAGACACATTTGTCATGTATTATGTAAACAAACAGAATGATGGGAGTGAGAATATGGGCAACAATGCAAAGGCAGTCTTGCAAAGCAAATTGATTGTATATTCTGTTTGTTACCAAGAAGCGAAGAAAACCAAAGACCTGAAACGCATGGTGCTTCTGGGAACCATCATCAACGACCTGCATAACGAAATCTCTTTGTTGGTCGACTAAGCAGCGACTCCTGCAAAACAGCGGGAGCCGCTGTTTTTTTATTTGCAAACAGAACCTCAAGAAAAGACCGTGTCCCGAATAAAAATCAGTGGTCAGAAAAATTCAGCCCTAAAAATGATAACATCTTAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCACACGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //