Array 1 1690726-1690454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMO010000004.1 Lactiplantibacillus argentoratensis strain LQC 2485 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1690725 29 100.0 32 ............................. GCGTATTATTTTGTTTTCTTTTCTTATTCATC 1690664 29 100.0 32 ............................. TAATCATGACATAGAGAAGAAATACCAGAAAG 1690603 29 96.6 32 ............................C AGAAGTTAAAGTCGTATATTTTTTGGTTGTCA 1690542 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 1690481 28 79.3 0 ....A.................C-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACTACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1920470-1920131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMO010000004.1 Lactiplantibacillus argentoratensis strain LQC 2485 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1920469 29 100.0 33 ............................. GACTGACATTGCGAAGTTGAGTGATCGCGATGG 1920407 29 100.0 32 ............................. GAGCCTACTGCTGCTAAAGATGCAGTCGCTGC 1920346 29 96.6 33 ............................A CGTGAATTTTGCCATTACATTTCATCCTCTCCA 1920284 29 100.0 33 ............................. ACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG 1920222 29 96.6 32 ............................C GACTGTTCCAGCCTTGCCCGTGAAGCTAAGCG 1920161 29 96.6 0 .........G................... | GT [1920136] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 33 GTGTTCCCCATGTATGCGGGGGTGATCCT # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCCGGGCTGGCTTTGAGTTGGTTGATCATCGTGAGACAACATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCCATGCTTCACCGAGCTAAAGGGCACGGCGTTCGCTTAAGTCGTGTGACATTTGAAGGACTCCTATGTGTCAAAGACCTACCAACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTGATGACGGTCATTCCTGAAGTACAGTGATTGACTTACATCGGTGTTTACTGGATTGGTGAGCCTGGAACCAATGCTGACGAACCAGGGATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGCTATCCTCGAAGTCAAGTTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGCGGCGGGATTTGTCAAGT # Right flank : TGGCTTGAATGCAGCAGTGACCCGCACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGGATTAGCGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCGGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAAGTGACGAGCGAAATCAGGAAGATCAGTGTTGAGACGAAGAAGAATAGGGACCAGATGATGCTCAGTGTTTGATCAGTGATAAAAGCCCATTGTTTCAAATACTTGCCTGGATGAGTGGCAACCCGTTTAAAGTTGGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1928772-1929166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMO010000004.1 Lactiplantibacillus argentoratensis strain LQC 2485 Scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1928772 29 100.0 32 ............................. CAACCGCCATTATCCAACCAATTCGCTAGCTG 1928833 29 100.0 32 ............................. AACATCAACATCGAAAGCCCATTGGGACTTGG 1928894 29 96.6 32 ............................T ACCAGCGACCGCCCTCATAATCATTCTTAAAT 1928955 29 100.0 33 ............................. GGACAATCGAGCCAGTAACCTGTATTGGGCTGA 1929017 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 1929078 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 1929139 28 89.7 0 ...............A.......-.A... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACCGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : CAAACAAAGCCATAGATAAAGCAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1933653-1934357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMO010000004.1 Lactiplantibacillus argentoratensis strain LQC 2485 Scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1933653 28 100.0 33 ............................ TACGCTGTATTAGCCCCATTTAATCACCTACCA 1933714 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 1933776 28 100.0 33 ............................ TACGCTGTATTAGCCCCATTTAATCACCTACCA 1933837 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 1933899 28 100.0 37 ............................ TAAACGATGACTTAGTTACTTATATCACGGACTGGAA 1933964 28 100.0 33 ............................ TATGGTATTTTTCTCTCATCTCATCGCTTCCAT 1934025 28 100.0 33 ............................ CCTAACGTGTGCTTGTGGCGGAATAGGTAGACG 1934086 28 100.0 33 ............................ TAGTTTCCAGATTACCAACAGTTTTTTGTACGT 1934147 28 100.0 33 ............................ TCGTGCCATCATCTGCAACGGTTGCCTTGGTGT 1934208 28 100.0 33 ............................ TTTGGATATCAACCAGCTTGTTAGTTCAGCTTA 1934269 28 100.0 33 ............................ CGTGTCATTGTAGATAGGTGCTTCTGGCTCAAC 1934330 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ===================================== ================== 12 28 99.4 34 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : AAAACCGGCGCCCAATCGATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACAATATCTTAGAAACCATTGCGGGTTTGCTTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCCCATTTTAGCATCATTCCCCGCTAAAACTGCCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTGAAATTGGCATTTAAAACACCACTGGCTGATCAAATGCGCCCGCAATCACTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGGCAGGCCAGCCATTACGCCAGATTATTGATCAACATGTTAATATTCCCCTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGTCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAAAACATTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //