Array 1 127920-126809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQN010000004.1 Nocardia higoensis strain BJ06-0143 NODE_4_length_428783_cov_28.876411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 127919 28 100.0 33 ............................ CGCCGCACCGCTGATTCAGCCGTTCGGTGACGC 127858 28 100.0 33 ............................ CAAGTGCCGGAACCGTACAGACTTGGGGTGCAG 127797 28 100.0 20 ............................ CAAACAGACTTGGGGTGCAG Deletion [127750] 127749 28 100.0 33 ............................ CAGCATCACAGTCGCGGCGGACGACATCAAGCT 127688 28 100.0 33 ............................ CAGGGCGCGGTCGGCGTCGGTCTCGGGGTCGAG 127627 28 100.0 33 ............................ CAGTCCCCAATGTTTCCTGCGAGTCGGTGAAAG 127566 28 100.0 33 ............................ CGCCGCTGTGCGGGACAACCAGCCTGGAGAAGC 127505 28 100.0 33 ............................ CTCGGTCATCGCTTCGGTCATCGCGTAGCGCAG 127444 28 100.0 33 ............................ CCGTTTGGTCTGTGTGCTTGTGGGCCCTGGATG 127383 28 100.0 33 ............................ CTCCACCCGGCCGTCGAGCGTGTACTCGACGGC 127322 28 100.0 33 ............................ CGCGTACCGGGTGCCGCGGGTGGTGACCGGTTT 127261 28 100.0 33 ............................ CGCCAACGAGATCGAGCAGCAGCGCGGGTTGAT 127200 28 100.0 33 ............................ CGCATCGATCTCGTCATCGACGTCTCGCAGCAT 127139 28 100.0 33 ............................ CCCGACCAGCACCTGATCGAGCACGCCGGATTC 127078 28 100.0 33 ............................ CGAGACCCGCACCTGACCGAGGCGTTGCAGCTG 127017 28 92.9 33 ..........T.........A....... CGGCGACCCTGGGTACTCGGGGATCTCGAACCG 126956 28 92.9 92 .......................A.C.. CCGCAGCATCTGGTGGAGCTCCTCTCGATCGCCGTAGGCCCGCGTAGTGGGGATCGTTTCGACCGGCGGGTGCCGGCCAGCACCAACCGCAA 126836 28 85.7 0 ...A....T.....T..A.......... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 18 28 98.4 36 GTCGGCCCCGCGTACGCGGGGATGGTCC # Left flank : CGGTTTCCGCACGGTTGTCAACCCGACCCGCGATCGGGCAGCCCCTAAACCGGCCGGCGGCAGTGCGAAACAGCGCGGCAGACGCTCTCCCCATTCGAGCCCGAAGTGGGTGGAATCCTGGTTCACAGAACGTCTTCAGCCGGAAGGAGAGCCAAACATCTCGCCGAACGGCGTTCGCAGAATCGGCGCCCATGCCACCAGTGAACAATTCGCTGTTCGTATGCTGCCGATGGTCTCTTCCAATGGACCGCATGCCGGCCTTCGGATCACCCGAGCGGAGATCAAAGGCACTCTCACAGCAACCGACCCAGCCACCTTCGTCAACGCGCTCACCACCGGCATCGGGCACGGGCGGGCGTACTCGACTGGGCTGATCCTCATTCGCGCGTGAAGGTAAACCATCGGAGCGAGCTACTCGCCGAACCAGTACGTGCGCAATAGACCTTGGGAAAGTGAATGAAAACCGAGGTGTTGCGCTGCAAAGCAGCAGGTCAGGAAGT # Right flank : TCCTATCAGGGCGTCGCCACAGCCGAAGCATGAAGTTTGATGTCAGGTCCCAGGATCTGGAATTGGGACTGACCGGGCTCACCGTGTTCGAGGTACACAGTCGTTCCTTCGGTGGCGTACGCGCGATGCAGGCGGCGGGCAAGCCTCGGAATCAGGTAGTCATCGATGCGGTTGTTCGGCACCCACTCCCAGTGGTCCAGTTCGACGGTATCGAGTCGTATCCGCTCTTCGTCGGCACCAAGTATGCCGCAGGCAAAGATGTACAGGAGCTTGTCGCCTTCGTCATCACGCGGTGCCCAGTCATACGCGAGTAGCCGTGTGGGTGCACGGTCAAGGCCGATCTCTTCTCGGACCTCGCGGCGGCACGCCTCGACCAGGGACTCGCCGTGACCTTGTCAGGAGTTGGTCTGCTGCGGAACGCGTTTCCTTGAGGGAAATCAATCCGACAGCTCTCAGAACTTTCATGATGGCCGCAGGCTTGGCGTCGCCCGGGGCGAGTT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGTACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136387-137695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQN010000004.1 Nocardia higoensis strain BJ06-0143 NODE_4_length_428783_cov_28.876411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136387 29 100.0 32 ............................. TCACGCCGAGCTAAGGGCCATCCCCGCACCGC 136448 29 100.0 32 ............................. GGGGTGGCCGTGATCAGGTCGAGGACAGTGGT 136509 29 100.0 32 ............................. TCGCGGAGACTCAGGTAGCGCACCATGCCGCC 136570 29 100.0 32 ............................. CCGAACGCCGTGCAGATCTGGGATTCGTGGCG 136631 29 100.0 32 ............................. ACCAACACCCAGCAGCCCGACTTCGCCGCGAT 136692 29 100.0 32 ............................. GATAGCCACGAACGAAACACGAGTTCTTGCCA 136753 29 100.0 32 ............................. TGAATATGGCAATGAAAACGCTCCAGACATCG 136814 29 100.0 32 ............................. TCCCGCCCGTTCATCCTCTGATAGATGGCGGT 136875 29 100.0 32 ............................. TTGTTGTGCACGTATTTCACATCATCGGGCTG 136936 29 96.6 32 ........................A.... CACCATTGCTGTGTGGTGACGGCGTACGCGAT 136997 29 100.0 32 ............................. CACACATATCGGGTGCCATGCCGCAAGTTCGC 137058 28 96.6 32 ....................-........ TGCTCGGTGATCGCCCTACGCGCGGAATCGAC 137118 29 100.0 32 ............................. GCCTGGCCGACATTGTGCGGGTCGCAAGATTG 137179 29 100.0 32 ............................. CGGTTCAGGATGTGATCAGCCGGGGTGGGCAC 137240 29 100.0 32 ............................. GGGCAGTGGGCGGCGCGGCACCCCCGCGGCTT 137301 29 100.0 32 ............................. CGGAATAGTCGCAGCACCGACTTCACGCAGAT 137362 29 100.0 32 ............................. CAGTGCCGCGGCCCTTCGGGGTTGCAGGTGGC 137423 29 100.0 32 ............................. CCGCGGGTCTCGGCGACCATGCGGTGGCCGAT 137484 29 100.0 32 ............................. TTGATCTCGCCCTCGAACTGAGTGCGTTTGCG 137545 29 100.0 32 ............................. TGGGCCGCGATCGCCCGCCCCGCGGCGGGCAG 137606 29 96.6 32 ..............A.............. GTGCCGAGGTTGTCCTGCGCGCTGTTGACGGC 137667 29 79.3 0 .............CC..A....GT.C... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTCTGCCCCGCACGTGCGGGGATGGTCCC # Left flank : GTTCCGGTCCGGTGGTTTTCGAGGGGGCGCATACCTGCTACCAAGACATGGCCGCCTCTCGGTCGGGGACCATTCGGACGGCTGGACGTTCTCGTCGTCGATGCTGATGGTCGGTGCGAGGGGCTCCCCGAACGCCTTCGGTACTCCGATACCCGGGGTCTGTCGATTTCTCGATGACAACCTCGGACCTGTCGATAGGCTCGGACGGAAGGGTTCGCCTGCTGAAACGAAGTGAAGTAACGTACCAGTCGCCCCGTAATGGCGGGGATGGACCGTAGCTGGGCGTCAGCTCATCTCGAGCCCCGGAGAACCGGGGAAACGCTCGTTGCATCTGCAAGCATCATGGTTGAATTCGCGATCATGTACAGAGGCGCATCGTGCGAGTCGTCCCCCGCAGTAGTGGATGCTGGTCGACTTCGGCGGGCTGCGCTCTTTCACGGTAGCGATTCAAAGTGAATGAAAACGGACGTGATGCGTCGGAACGCCGCAGGTCAACAAGT # Right flank : CACCACCGCCACTCTTCCCGGCAGAGAAACCGCGCCTGCCCGCGCACGCAGGGATGCGTCAGCGTTATCTGCCACGGAATGATGCATCCCCCACAGCTCGCTCTCTTGCTGGCGGCATTGCGGGGCACCACGTTATTGACGCTTGCGTGTAGGTGGGCGTAGGGAAGGGCCCGGCGCGACTGGGATCGCACTGCGCTTCCCGAATCCGAAGCTATGTTCCTGTAACAGGCGTTGCACCGGCCGCTTCTGCGATCTGATCGATATGCCTAGCGAGATCGAAATCCAGCTTGGTCAGTTTCCGTCCGGCGTCGTGAGTTGTGATCCGGAACTCGACTCGCTGCCAGGTGATCAGCATGTCCGGGTGATGGCCGACTTCACGGGCCTTCGCTGCGACGTAAACGGCCAAGTGGACGCATTCGTGATAGGTGTGGGCGAACGTACGTGTGATCTCGTTCCCGTCGCGCTTCCAGCCGGGTAGGGCGGCAAGGGCAGCGGCGATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //