Array 1 1771-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACCWR020000030.1 Campylobacter fetus strain D5675 NODE_16_length_4249_cov_103.204_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1770 30 100.0 36 .............................. AATTTTGTATGAATGCGTTTAACAAAAATATTCCAT 1704 30 100.0 37 .............................. TAAGCTCCGCGCTCACAAACGTCCAAATCATAGATAA 1637 30 100.0 36 .............................. AAATTAATAAATATAATAAGCGATAAGGAGATTTAA 1571 30 100.0 36 .............................. AGAATGGATTCCATTTTGCGCGAGCTTGTATTTCGA 1505 30 100.0 35 .............................. CTTAAAAGTAAAATAGCAAAGACAAAAAGCAAAGA 1440 30 100.0 36 .............................. AGAGTGGGCTCCATTTTACTCAGATATGTATTTCAA 1374 30 100.0 35 .............................. GAAGATTCAGAAGTTGTAAACACATACGGATTCGA 1309 30 100.0 36 .............................. TAATCTATACTTTAAAATTATGGAAGAAGATTACGA 1243 30 100.0 36 .............................. GAGCTTTAGGTATTGATCCAAATACATTTTATCAGA 1177 30 100.0 36 .............................. TGCATCTCTTACTATCTCCTTGCAACACCTAAAAGT 1111 30 100.0 36 .............................. ATAAATGGCAGATCAAGTATATGATATGCTAAATGG 1045 30 100.0 36 .............................. GTGTACAAGAACTTGCTTTGTAAAATTTTGATTATC 979 30 100.0 37 .............................. ATAACTTAGATTTAACTGCAGATTTTACCATATCCCC 912 30 100.0 36 .............................. TTACTTTTAAGAAAGTCATTTAGCTTGTTAATATGC 846 30 100.0 36 .............................. TTACTTTTAAGAAAGTCATTTAGCTTGTTAATATGC 780 30 100.0 37 .............................. ATATTATATTAAATGGTTTTAGTATAGATTATAAAGG 713 30 100.0 36 .............................. ATATGAAAGGCGGATCACAATATCGTGTTTTAATGA 647 30 100.0 36 .............................. TATAGAACTTTTTGTTGATTTTCAAAACGGTAAAAA 581 30 100.0 36 .............................. CGCGCAATGGGATATTAAAATCGAGCTTGAAAAAAG 515 30 100.0 36 .............................. ATTGCCGAAACTAAGCCCTAATTCTACGGCTGCGCC 449 30 100.0 37 .............................. TTTGCCTATGATTGCTATCTTCAAAGTCAATACATCA 382 30 100.0 34 .............................. TCAGGTTCTCCTGGTCCTGGTTCTGATGACAAAA 318 30 100.0 36 .............................. TCAAATTCCGTGCTAAGAGTGTTTATCTCCGCGCAA 252 30 100.0 36 .............................. CCGCCATCTGCGAACATTTTTAAGCCTTGCTTCTCT 186 30 100.0 36 .............................. CATCGGATATGGCTTTTTAGTTTCTGCTTTAGAAGA 120 30 100.0 36 .............................. AAAATGCAAACATTGCAACAAAAATAATATTAACGA 54 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : GGAATTTTAGTTATTTTTGAGAGCGTTTTATCATTTATGCTATCTTTTTCTTTTGCACAGATATCTAAAATCTCTTTTGCGCTAAATTGCGCTATAAAATCATATAGCTTTTTTCTATGCCCCTTCCCATTTTTCCAGCCATACAGGGTGCCTTGCGAAATACCTATTGCGCCTACTACTTCTTTATCCCGTAAAGGAATTATAGGAGTTTTGGCTCCAAAATTCTCTATTAAGAATTCCGGGTCTAAATTTTTAAAGAAAAGATATATATCTTTTGTGTAACCATCAGATCTCTTCCAGCTTGCTATAGTTCCATACGGAATTTTTGTTATTTCAGATAGCCGTTTATCTGTTAATTTTTTTATCATTTTAATCCTTTTTTAAGTTTATTTTAAAAGTTTGCAGATATAATGCAAATATTAAATATATTGCTACAGGCAATTTTGTGTTAAAAATTAGCAAACAACAACGTTATTAATTTTTATACTTCCAATACCGCC # Right flank : CTATAATAAACTCATCATCTAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3256-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACCWR020000034.1 Campylobacter fetus strain D5675 NODE_19_length_3279_cov_112.179_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3255 30 100.0 36 .............................. TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT 3189 30 100.0 36 .............................. TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA 3123 30 100.0 36 .............................. TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA 3057 30 100.0 36 .............................. AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT 2991 30 100.0 36 .............................. GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT 2925 30 100.0 36 .............................. TGGGGATTCGATGAAATTTTTAACTATATAGCATTC 2859 30 100.0 36 .............................. TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT 2793 30 100.0 36 .............................. TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC 2727 30 100.0 36 .............................. TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA 2661 30 100.0 36 .............................. ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC 2595 30 100.0 36 .............................. CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA 2529 30 100.0 36 .............................. TTTGAAGTGCACGACGCTATAACTAGAACACGGATC 2463 30 100.0 37 .............................. ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG 2396 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 2330 30 100.0 36 .............................. TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA 2264 30 100.0 36 .............................. GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC 2198 30 100.0 36 .............................. TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC 2132 30 100.0 35 .............................. AATCCAACTTAACAAAAATGTTATATAAAATCACC 2067 30 100.0 36 .............................. TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT 2001 30 100.0 36 .............................. AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT 1935 30 96.7 36 .........................T.... CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT 1869 30 100.0 36 .............................. CGTTTTATTTCCTTGGAAAGCAAGGTATAAGCGTAG 1803 30 100.0 36 .............................. CATCCTCCTTTTAATTTATTACATTTAAACAATTTA 1737 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.9 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TACTTAGATGATGAGTTTATTAT # Right flank : AAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGTGACCACATTATAAGTCAGGCTCAAAACATAGCTAGAGTAAATCAGTCTAGTAAATACGGAGTAAAGCATTACAAAGTATTAGCTAGGATAGATAGCCGTACAAGCGATATCTGTAGAAGTATGAACGGACGCATAATCCCAGCCTCGCATATAGAAGCTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTGGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACTGGGGTTGAGAGAGTAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //