Array 1 11-1224 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT220504.1 Lacticaseibacillus rhamnosus strain BPL5 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 31 .................................... CGCCAAACGCTGAAACAGGTGATGACAATGG 78 36 100.0 30 .................................... GAGCAAAACATTAAAAACATGCAAGGCGAT 144 36 100.0 31 .................................... AGTGTTTGCTGATTACTTGGATACCCTCGCC 211 36 100.0 30 .................................... CATTTTGGCTATTTTGAAGATGGCACCACG 277 36 100.0 30 .................................... TCAAAAGAGGAAGTGAAGCAGCGCTATCTC 343 36 100.0 30 .................................... GATCACCATTTGGCTTGCGAACAACCTTAT 409 36 97.2 30 .......T............................ GCTCATGCGCTCCAGAAAAGGTCTTATTGA 475 36 100.0 30 .................................... GTGACGTTTATTCTAGGGGCGCGCGGTGTG 541 36 100.0 21 .................................... TCTTGCAACTTGTCTACCAGG Deletion [598] 598 36 94.4 29 ..................................CT ATTGACGTTGAGCCTAACCTTGTCAGACA 663 36 100.0 30 .................................... AAGTCATCAGTGTTTGGACTGTTCCTTACA 729 36 100.0 30 .................................... TTTGACCCTGCGTCCCGTGTATTTTGTTCC 795 35 97.2 30 ......-............................. AAAGTTGGCGGCATACGTTCAAGCAACAAG 860 35 97.2 30 ....-............................... AAATTGCCCGACTTGCTGCGCCGTCTAACT 925 36 100.0 29 .................................... TTGATCGGTTGCCACTGTGCGGGTCATTG 990 36 100.0 30 .................................... AATTGCAGTGACAATGATCGTTGCATTGCT 1056 36 100.0 30 .................................... GCAACTTGTGACCAGCCCCATCTGCTTGCG 1122 36 100.0 31 .................................... GAAAAATGGCGCAAAGATTGTCGATCAAGAG 1189 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.3 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TTCCGAATCCG # Right flank : CTTCACTCTCTTCCATGTTCTAAAGTGTAGAGTCTCAGGCAAATATCAGATCAAAAAACACCTTCAGTGAAGACGCTCCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAGCAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACGAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTGAAGATAAACGCATAGGCCTGATTCGCGTTGTAATAGATCGCAAAAATTCGGCAGCCCGTATCTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGCCTACAGTTGATTGAAGAACAATTTCCGCTCATTCAAAATGGTATGTAGACACGATTGCGGAAGAACCCAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 3009772-3011392 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT220504.1 Lacticaseibacillus rhamnosus strain BPL5 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3009772 36 100.0 30 .................................... TTTCAGGTATCGTAAGCGAACGTCTAGGCA 3009838 36 100.0 30 .................................... TCAAAAATCGGGTTCTCTCTCAGACCCTTG 3009904 36 100.0 30 .................................... AACAGTGACTTGGCTAACAACTTGCAGCAG 3009970 36 100.0 30 .................................... ACATATTTTCGTGGCCACGGTTTACCATGA 3010036 36 100.0 30 .................................... TTTTCATATTATCAATGACAGCATACGAAT 3010102 36 100.0 30 .................................... GACATATTCGCGGCAAGTGCTTCCGAATCC 3010168 36 100.0 30 .................................... CGCCAAACGCTGAAACAGGTGATGACAATG 3010234 36 100.0 30 .................................... GAGCAAAACATTAAAAACATGCAAGGCGAT 3010300 36 100.0 31 .................................... AGTGTTTGCTGATTACTTGGATACCCTCGCC 3010367 36 100.0 30 .................................... CATTTTGGCTATTTTGAAGATGGCACCACG 3010433 36 100.0 30 .................................... TCAAAAGAGGAAGTGAAGCAGCGCTATCTC 3010499 36 100.0 30 .................................... GATCACCATTTGGCTTGCGAACAACCTTAT 3010565 36 97.2 30 .......T............................ GCTCATGCGCTCCAGAAAAGGTCTTATTGA 3010631 36 100.0 30 .................................... GTGACGTTTATTCTAGGGGCGCGCGGTGTG 3010697 36 100.0 30 .................................... TCTTGCAACTTGACAAACAACTCTACCAGG 3010763 36 100.0 30 .................................... TATTGACGTTGAGCCTAACCTTGTCAGACA 3010829 36 100.0 30 .................................... AAGTCATCAGTGTTTGGACTGTTCCTTACA 3010895 36 100.0 30 .................................... TTTGACCCTGCGTCCCGTGTATTTTGTTCC 3010961 36 100.0 30 .................................... AAAGTTGGCGGCATACGTTCAAGCAACAAG 3011027 36 100.0 30 .................................... AAATTGCCCGACTTGCTGCGCCGTCTAACT 3011093 36 100.0 30 .................................... TTGATCGGTTGCCACTGTGCGGGGTCATTG 3011159 36 100.0 30 .................................... AATTGCAGTGACAATGATCGTTGCATTGCT 3011225 36 100.0 30 .................................... GCAACTTGTGACCAGCCCCATCTGCTTGCG 3011291 36 100.0 30 .................................... GAAAAATGGCGCAAGATTGTCGATCAAGAG 3011357 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGAATGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGCCTGTGTGAAAACACCG # Right flank : CTTCACTCTCTTCCATGTTCTAAAGTGTAGAGTCTCAGGCAAATATCAGATCAAAAAACACCTTCAGTGAAGACGCTCCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAGCAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACGAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTGAAGATAAACGCATAGGCCTGATTCGCGTTGTAATAGATCGCAAAAATTCGGCAGCCCGTATCTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGCCTACAGTTGATTGAAGAACAATTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //