Array 1 467723-468361 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUV02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0185 NODE_4_length_701044_cov_43.523649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 467723 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 467784 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 467845 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 467906 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 467968 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 468029 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 468090 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 468151 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 468212 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 468273 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 468334 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485113-487887 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUV02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0185 NODE_4_length_701044_cov_43.523649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485113 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 485174 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 485235 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 485296 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 485357 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 485418 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 485479 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 485540 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 485601 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 485662 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 485723 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 485784 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 485845 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 485906 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 485967 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 486028 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 486089 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 486150 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 486211 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 486272 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 486333 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 486394 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 486455 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 486516 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 486577 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 486638 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 486699 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 486760 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 486821 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 486882 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 486943 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 487004 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 487065 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 487126 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 487187 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 487248 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 487309 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 487370 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 487431 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 487492 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 487553 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 487614 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 487675 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 487736 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 487797 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 487858 29 96.6 0 ............T................ | A [487885] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //