Array 1 269512-271616 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYV01000002.1 Salmonella enterica subsp. houtenae serovar 44:z4,z23:- strain 2010K-0686 NODE_2_length_467189_cov_0.349361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 269512 29 100.0 32 ............................. CTCTGACGGTAGCGGTTTGGTGTAGTCATTTG 269573 29 100.0 32 ............................. GGTAGCGCATCAACATCATCAACCAGCCATAC 269634 29 96.6 32 ............................A GCAGGGCTGGGAGGGTCATTGTCTCAAGGTCA 269695 29 100.0 32 ............................. ACTTGGGAATGCGCTGAGGTGGGCAGCAAGCC 269756 29 96.6 32 ............................T ACGGCAAGAAGCGCCGGAGAAGATTACCGATC 269817 29 100.0 32 ............................. CGGCGAGGAGCAGTCACGGAGGCCAAATAATT 269878 29 100.0 32 ............................. CGGCGAGGAGCAGTCACGGAGGCCAAATAATT 269939 29 100.0 32 ............................. CCGAATCTATTCTCTATACAGATCTTAAAACA 270000 29 100.0 32 ............................. TGAACGAGGAGATAATGCAGGTAGCGGCTGAG 270061 29 100.0 32 ............................. CGAAAAGGGCTGGCGGAGTGCGCCAGAGGTCG 270122 29 100.0 32 ............................. TGATTTCTTGCCTGCTGTTTCGAGGGAGGTGG 270183 29 100.0 33 ............................. CGTTTGGCATCGATGTACATGCTCAAAGCATGA 270245 29 100.0 32 ............................. ATCTGATTGATAGCGTCTGATAACGCTCCGTC 270306 29 100.0 32 ............................. AAATCCGCCAGGCTGAAAGAGGCCTATATAGC 270367 29 100.0 32 ............................. ATTTACCGGAACGCTTGTCTCACCAGAGATAA 270428 29 100.0 32 ............................. GGGAAATGATGTACCGGGTTTATATTAGAACG 270489 29 96.6 32 ...............A............. CAGAACTCAGCATCAAGGGAAGCGAAAAGGGC 270550 29 100.0 32 ............................. AAATGGCATTCGCTGTATGCATGGGATATTCC 270611 29 100.0 32 ............................. TCTGAACTGGCGGAAATATTCAGTCGCTGGCC 270672 29 100.0 32 ............................. GGAAAAATCCGACAAGACCCCCAGAAGTACGC 270733 29 100.0 32 ............................. CCAAAGGGGCCCTCGGTTTCCGCGAGACCTGC 270794 29 100.0 32 ............................. CGCCCGCGATAATAGTGAGTAAAATTTTCTTC 270855 29 100.0 33 ............................. CGGCGCTCACGTTATTTTTGTTCTGCCAATGCC 270917 29 100.0 32 ............................. CTATCCCGTAATCTTCTACGGTAATAACTTCA 270978 29 100.0 32 ............................. GGAATCAAAATGAACGCATCAGTAAATGAAGT 271039 29 100.0 32 ............................. GCCTTTTGCCGTTAGCACTGCGTTAGGGACGC 271100 29 100.0 32 ............................. ATGCCCGGGCGTTAACGCTGCACGACGAATTG 271161 29 100.0 32 ............................. TTTTAAAATATCTGTCAATAATGGCGGCAGCA 271222 29 100.0 32 ............................. GGTACACCTCTGGTAATAATGGAGGTCTTGAT 271283 29 96.6 32 ...........................T. GTTATTGCATGGCGTGTCCTTGATGCTCAATT 271344 29 100.0 32 ............................. CCAAAGATTCTCATGGCCTCTATGGACATGTC 271405 29 100.0 32 ............................. GCATGATGAATCTTAAAAAGATGCACCACGCA 271466 29 100.0 32 ............................. CGCTGGCGCTGTTCTTCGGTAGATTTCTCCGC 271527 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 271588 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //