Array 1 475047-476293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATU01000032.1 Salmonella enterica subsp. enterica serovar Newport strain sg_6962b newport_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 475047 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 475108 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 475169 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 475230 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 475291 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 475352 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 475413 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 475474 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 475535 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 475596 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 475657 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 475718 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 475779 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 475840 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 475901 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 475962 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 476023 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 476084 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 476145 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 476206 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 476266 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 484238-486139 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATU01000032.1 Salmonella enterica subsp. enterica serovar Newport strain sg_6962b newport_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 484238 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 484299 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 484360 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 484421 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 484482 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 484543 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 484604 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 484665 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 484726 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 484787 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 484848 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 484909 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 484970 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 485031 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 485092 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 485153 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 485214 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 485275 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 485336 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 485397 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 485458 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 485519 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 485580 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 485641 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 485702 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 485763 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 485824 27 69.0 15 ................TTCT--.C.G.T. GCAACGACAGAATGC Deletion [485866] 485866 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 485927 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 485988 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 486049 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 486110 29 100.0 0 ............................. | A [486137] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAGAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //