Array 1 7646631-7646183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032568.1 Nocardia yunnanensis strain CFH S0054 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 7646630 30 76.7 31 G....T...T..TG.A.......C...... TCGCGTGTACGACGGTCGGCAGGACCTCGCA 7646569 30 80.0 36 G........GT..G.AT............. TGTTGCACATGGTCGACAGGTGCTGGCCGGTGCGTG 7646503 30 83.3 31 TCA.............T............C CGCACAGCCACGGATGGACCGAGATCGAACG 7646442 30 83.3 31 G.........T.T...........T....T TGAATCCGGTGCCGACATCCTGGATCAGCAC 7646381 30 100.0 29 .............................. AGTACCCGAGCCTCGCAGCTTTCCCTGCT 7646322 30 80.0 31 TC..C..................T....AC CCCAGCAGGCGTACGGATTCCGTGCATGACC G [7646318] 7646260 30 73.3 18 GC.......G......T...A...A...TC ACGCAGCGGCAAACCGGC Deletion [7646213] 7646212 29 70.0 0 GG......AG.-..T.T.........T..C | T [7646196] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 80.8 30 CTGCTCCCCACGCACGCGGGGATGGTCCGG # Left flank : AGCGGTCAGCAGCAGCATCGAGTCGACCCCACCGGTCTCGGCGTAGCGGACGAGCTGCTCCTGCACCGCCTCCAGTGACCACCAGCCCGCGGCCTTGATCTCGACTCCGACTCGATGCAGGTCGTCGTAACAGATGACGAAGTCGATCCGGCTGCCCCGCGCTGTGGAGCTGCCCTCTGACAGCTCACGCTCATGCTCGATCGTGACGTCCTCATCGACGCTCGCATCGGACCACACATTCCAAATGAGTTCATGGAATTCGTCCTCATCGCAGTAGCGGAAGTCGGTGTGCTCGTCTCCGAAGGGATCGATCAGCGGCTTGATGTAGGTGTTCCATATCGGTGAATCGTGCACCTCGCCCGGCCTCAAGCAGACGTGATGTACATAATGACGGTCGACGTAGTCCGGAACACCATCGTCCGAGTCGTCCATTGATCCAGTGTGGCAGCGGTGTCCTGTGCGATTCGGCAAGATGGGAATTCGAGCATCCAGCGATCCTC # Right flank : TGTCAGTTGGGTTGTACTGCTGGAATTCTTAAGTTTTTCCTCCGAAAAGTCCGCCAGTTCGGGTTCAGTGTGGCGAATTATTCAGCGTTGCTGAGGATTCGGCTGATCGTGGATCGGTTGCGGTTGGTCTCGCGGGCGATTTCGGTTGGTGTTCTTCCCTCATCGAAGTGGCGGGTAAGGACGAGAGCCACCTCGGCGGGTTCTCCGCGGCGTGCACGGTCGCGCACACAGATCCGGGCCGCTAGTTCGCGCCAATGCTCGGCATTCGGCGGCGGGGACACGCTCGTGCGCACCATCGTTCCGTCGTTATTGCGTGAGATCGGGACCGGTTCTGACGGTTGGAGCTCGCTCGATCGAGCGGTTGTTCATAACAAGCCGAGGTTATGGTCGTCGATGTAGCTGAATCAACTAGTGTGCTCTCCACGCGAGCGGGGGTGGTCCGGTACCTGGCGTGCGCGTCACTCGCGTGGCGAAGTGGTCCCGCGCAAGCAGGGATGGTT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.04, 5:-1.5, 6:0.25, 7:-0.16, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7657236-7655642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032568.1 Nocardia yunnanensis strain CFH S0054 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================ ================== 7657235 30 90.0 31 ............A.........G.....C. GCACCGGACTCGCCGTTCCGTCTGGCGTACA 7657174 30 80.0 31 ......T....A....T.A.........CA GTTCGGAAGACATGAAACGGGCGTCCTCTCC 7657113 30 83.3 29 ...T.......A..T.........A....T TGTCCGTATCGCGCCGACGGCAATCACGC 7657054 30 83.3 31 .G..G....G.....A.........C.... ACCACGCTTTGCGAAGCGGTTCTCAGGGTAG A,T [7657042,7657047] 7656991 30 90.0 92 ....G....G...................C GCCAGCAGGTGCGCCAGCTCGGCAACGCGGTACGCTCCCCTCGCACGCGGGGACGGTCCTACTCTGCTTACACCTACGGTTCTGGCCCGCCC 7656869 30 93.3 31 ..........T..................C GATCGGAGCGGCCAGATCGTCTTGATGGTCT 7656808 30 100.0 31 .............................. CGCGCACCGCAGTGACAGGATGGTCGATGTG 7656747 30 93.3 30 .............C..............C. ACACCGTGTGGTGCGAAGCGATCCAAACCA 7656687 30 80.0 32 .GC..........G..........AA..A. TGGCCGCGCTCGAACATGCCTTGCACCAGGGT 7656625 30 83.3 31 .T.......G..............AA...A CGGCCACACGGGCCTATCGACGACTAACTGA G [7656604] 7656563 30 76.7 24 .T.......G..G...TA......A....T CTCGGACTCGAAGTCGACCCGACC Deletion [7656510] 7656509 30 76.7 34 .T....T..T...G..........A...TT TGCTGTCTCCTCAGCCACGGCCTGGTCAACAAGC 7656445 30 66.7 31 AT.G.....GT..G.A.A....C......A TCACGGTGTAGTGGTGCGGGCAGAGGTTGGC 7656384 30 76.7 36 .T.....GTG........C.........CA CGCAGGAGCAGGTTGCCGAGCTCGCTTAGGCTTAGG 7656318 30 70.0 30 .T.......G.CT.T.T......A...T.T CATTTGCCTCGCCCTTCCGTACAGTTCGGT 7656258 30 76.7 90 .T.....A.GT.........A.....T..T CGGGCGGGTACGGATTGATCGGAATGATCAGGTGCTCCCTGGGTGCGGGGATGGTCCTCGGCCGATGATGTACCCGACCTGCACCTGAGC 7656138 30 83.3 31 .TCT.....G...................A TCACCAACGCCATCAAGCTGACCGAGGAAAC 7656077 30 76.7 17 .T..A..TTG..............A....A ACCACAAGAAGCGGACA Deletion [7656031] 7656030 30 86.7 31 .T.......G......T............T CACCGAGGGACCGGTATTGCAGGCCCGGATC 7655969 30 100.0 27 .............................. CACAGGACCAAATCGGCGAAGTCGGCA 7655912 30 86.7 31 .T..........T...........T....T GGCTGATCCACCAGGTCGACATGGCGCTGGC 7655851 30 86.7 31 .T.........CT................T CGAGTGGCCCATAGATGGTGCGGTCGCGCTC 7655790 30 83.3 28 .T......T....G.......G.......C CTCGCACTCGATCTCCAACTGCCGCCGA 7655732 30 66.7 31 A..ACG.T.CT.T.......A........T AGAAAAACGTTGGGTGTGAGATCAGATCGCG 7655671 30 76.7 0 A....A...G......T...A...A....A | ========== ====== ====== ====== ============================== ============================================================================================ ================== 25 30 82.7 35 GCGCTCCCCACGCACGCGGGGATGGTCCGG # Left flank : GCTCACGGTGCTCCCACACACGCGGGGATGGTCCGGCCCGCGCCGCTGCCGAACAACCGCCCGCCACGTGCTCCCTCACGCAGTTGAAGTGGCGGGCGAGGAGGGTGAGACCGGCTGATTGCTTTGTCGCGCAAACCGAATGAGAATGGGTGAGTCGACACGCAAATGGCCTGTTCGACAAGTGTGCTCCCACCACGCACGTTGGGGATGATCCGATGCACATCCCGCACGGCTCGCCGACCCCGAAGTGCTCCCCGCACAATGTGGGGATGATCCCAGCGACGGCGAATCGGGAAGTCGTGTCCACCACACGCTTCCCGTACGTGCCGGGATGATCCGGCATTGCCGAGGCCATGATTCAGACTCAAGCGGTGCTCCCCGTGTATGCGGAAATGATCAGCGAATATTGTTGGGCGGGAATAGGTATCGATTCCGGCTCAATGCTGGTTCTGGCACGAATTTGGTCCTGGATCCAGCTGCTGTTGACCGCCCGCGACATC # Right flank : AATGGGATGTGGACCAGCGGTTCAAGGTGTTTCGTGCCGCAGGTTCGGTACTTCTTCTCGCATAATGAGGCGCTTTATACGGTGACCTTGGTGGCGAATTGTTCGGCGTCGCTGAGGATTCGGCTGATCGTGGATCGGTTGCGGTTGGTCTCGCGGGCGGTTTCGGTTGGTGTTCTTCCCTCGTCGAAGTGGCGGGTAAGGATGAGAGCTACCTCGTGCGGGTCTCTGCGGTGTGCGCGGTCGCACTCACATATCAGGGCCGCTAGTTCGCGCCAATGTGGCGGGGATACGTTCGTGCGCACCGTCGTTCCGTCGTTGTTGCGTGTGGTCGCCGGTTCGGTGTTGGAGGTTCTGTGCGCACGTAGGCGGCGCGCCTCGATCTCGGTGCACACGATTCGGGTTAGCGATCACCAGCAAGGCGACCGTTGCCTGGGTCATTGAGCCTTCGATTATCACCGGAGTTCTCCCTGCGCCCACGCGGGGATGGTCCTCGCTGCTTG # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.12, 5:0, 6:0.25, 7:-0.53, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCACGCACGCGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 7670247-7667808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032568.1 Nocardia yunnanensis strain CFH S0054 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================== ================== 7670246 29 89.7 32 T......C....................C ACCGCCGGCTTGCGGATTTTGATCGTGTTACC 7670185 29 79.3 32 .CA..A.C......C.............C GACCACGTGAAGCGGTCGGGGACGCTGTTAGC 7670124 29 72.4 98 .......C..GA..C....A...A.C..T AGGCCGTGCGTGCTCTGGCTGCTCAGTTCGGAATCCTCTCGCGCACAGTGGCGGGGATGAATCTCAGTCATGAACCGGGCTGTCGCGTCCTGATGACC 7669997 28 72.4 25 ..A..T.C...-..C..........C.TT CTACGGTGGACGTATTGACCACCGT Deletion [7669945] 7669944 29 82.8 32 A.....AC........T.......A.... CCGGCGTTCCAGGTGGCCAGCATGATCGCGGC 7669883 29 89.7 32 .......C......C..A........... CTGACCGCGTGCACGGTGCGGCCGGACCGGAC 7669822 28 72.4 17 .......C.A.AT.C..-...C.....T. TTGCCAATGGACATGTA Deletion [7669778] 7669777 28 55.2 31 ...G...AT.TC.GC-T.ACA.......C CGAGAAGGGGCATCACCGCCTGATCAGCAAC 7669718 29 79.3 32 T......G...A..C.T...........C AGGCGGTCGATCCGCTTGAGGTCTAGGCCGCT 7669657 29 62.1 52 .....G.C....GG..T..T.CC..AT.C CAAACTGATTGGGAATCAGTAGCTTGTGATGGAAAAGCTCTGGTAGCTATGT GGA [7669643] 7669573 29 79.3 34 .......C......C.........A.GGT CCCACAACCCCACCATCGAGCCGGTCACCATCTC 7669510 27 86.2 32 .......C.....--.............A TACGCGAGCCTGACCCCAAATGCGGTCGGCAA 7669451 29 93.1 32 .......C....................C AGATCAGCCTGCGCCGCACCGTAATCCGAGGT 7669390 29 100.0 32 ............................. GCCATGCACGCCGGGGTGAACAGCTGCTCGTC C [7669379] 7669328 29 100.0 32 ............................. TGGTGCACGCACACCAGCCGATCCGGATCCGG 7669267 29 75.9 30 .......C...A..C..C...GC.....T CTGCACAACAGCGGTTGAACCGTGTACAAC 7669208 29 72.4 34 ...TC..C....T.C.G...TG....... CATTGGACACCATCTCGGTAGAGGTGGAGCACCC 7669145 29 82.8 32 CC..........T.C........A..... GAAAAGAACAAGGGCCGCGGTGCCAGAGCCCT 7669084 29 82.8 32 .......C......C......GC.....C AACGCACCAACGCAGACGATCGATCCCGGGGC T [7669066] 7669022 29 79.3 28 ...T...C......C......GC....T. CAAGACAAGATCCGGCTTCGGAGGTTCA C [7669000] 7668963 28 62.1 32 ...G.TG..-..TGCA..C..GC...... GGATTCGTGGGCGCGGCGGTCCAGGATGGGGA 7668903 29 86.2 32 .......C...C.GC.............. AGTCGGCCGTGGCAGCCGGGTATCAGCCACCA 7668842 29 89.7 32 .......C......C...A.......... TCCGGTCCTCCGTTCAAGGAGACAACCGTGGT 7668781 28 79.3 32 .......C.T....C.T.A....-..... TTGCTGTGGTTGTCACGCCATCCGTAGCCCGA 7668721 29 82.8 32 ...T...C......C..A..........C TGGAAATGGCCTCAGTCCTGCAGTTCCGGGCG 7668660 29 89.7 30 .......C......C.........A.... GTCGAAGACATCTCGGACAACACACCCACG 7668601 28 79.3 32 ...TG..C.-....C.............C AGGTCGCGCAGCAGGTCCAGGTTCTCCTTGTT 7668541 29 96.6 32 ..............C.............. GCGAGGATGTGACCGGGCAGCTGTGCCGCGCC 7668480 29 89.7 32 .......C....T.C.............. GCCGCGCCAACCTCCCGCACGAAATCGACGTC 7668419 29 82.8 32 .G....GC...A..C.............. ATGAACTGCTCGACCTCGAAACCCAGCTCACG 7668358 29 86.2 33 .......C..T.T.C.............. TTGTACGTATCGCCCGCCACCGCCGACCGCGCC 7668296 27 82.8 32 .......C.......--..........TC AGGGCAACGGCGCGTACCTGCTGCCAATCTGG 7668237 28 82.8 32 ....-..C......C.........T...C TGGCAGTGGTACCGCGAGGCCGCGGACGGGGA 7668177 28 82.8 32 .....T.C...C..C..-........... AGCGGTTCCTTGAGTACGCCCGCCAGCAAGGT 7668117 29 82.8 34 A......C.C.............A....C GAGCCACGGCGGCGCTGACCGGCACATACTCCGT A [7668107] 7668052 29 62.1 3 .C..C..G...T.GC...ACT....CT.. ACT G,G [7668024,7668047] Deletion [7668021] 7668018 29 72.4 32 ....CT.C.A..T.C...A.........A GAACCCGCCCGTTTCCTCGAAGCTGCGGGGCA 7667957 28 86.2 32 .......C.A....C..-........... GACACCGGGTTCCTCAAAGACATGAGTGAACT 7667897 29 82.8 32 .......C..A...A.......G.....T ATGGCTGGACGACAAGCGAACAACGAGCCGCT 7667836 29 79.3 0 .C......T..C..C......T....T.. | ========== ====== ====== ====== ============================= ================================================================================================== ================== 40 29 81.1 33 GTGCTCCTCGCGCATGCGGGGATGGTCCG # Left flank : CGCGTACGGGGATTATCCGGACATCCGCTAGCAGCTCACGGGCGGCCGCGAGTGCTCCCCCGCGCGGCGGGGATGATCCGTAGACGCCCTCGGGTAGGTCCCCGTACCCGGGTGCTCCCCGCGCACGCGGGGATGACCCGCCGCAGTACTTGAGGGTCTGCTCGACTGCAGCGTGCTCCCGTACATGCGGGGATGATCCGAGCAACATTGGTGACTGCCAACGTGTTTCGAGCGCTCCCAACGTACTCGGAGACAGTCCACACGGCATTGCTATACCGCAGAAAGATTCCAATTGGCGTCATACGGTTACGAGGTCCTGTTTCATCGACTTGTCGGTGGCGGTGCGACGATCTGCCGGACGGTGATCCGAAATCTGTTCTACGGGGCGTTGATTTGGCGCTGAGTGACACGGCGCGGTCGGTTCGGGTCAAGTCGGTGCCGTGGCGCCGCTCCCCGCGGGGACGGTCCGTCGGCGGCCTCGCCCTGACCGTGGTAGTCAG # Right flank : TCCCGAAATACTCGCTGCGACAAGTGATTTCGGCAAGGATTACGCTGCTCAGCGACTGCCGGCACCGTGCTTCTTATGTATGTGGGGGTAGTCGGCTGGTCGGTACCGCTCGGTACGATTTTGTGGCGGTGCAACTTGGTGAATCCTGTTGCTGTTGGCGGAATTTGGCGTACGCTGCGCAAGGTCAGTAATCACCACAGCGGGGGAAGTGGTATGTCGGAGCCTGGAGCATTGTGCAGTCCAGTGTCTTTCGATCTTTCCTCTCAGCCGTGTATTCCGGTGCTGACTCGAGACGGCCAGAGGCAGTGGCGATCGTTGTGCGAAGTCTTTGCTGCGGCCGACTCGGATGTCGATATCGCGATCAGTCACCCGTCACCAGGTGCCGAGGTGGCCTGCTATGAGTTGCTGCTTGCGATCTGCCATGCGGCCGGATACACCCCTCGCTCACCGCAGGAATGGTCGAAGTGGATCGATCAGCAGCGGTCGTTCGACAAGGTTGT # Questionable array : NO Score: 4.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.05, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCTCGCGCATGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [63-76] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //